| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1505831 = | 268 (0.700) | 15 (0.050) | 9/94 | NT | 6.5% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 205 (0.630) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
Only 100 of 419 total aligned reads displayed.
CAGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAG > CP009273/1505764‑1505898 | cgcacacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttca < 1:17513498‑M1/1‑1 (MQ=255) aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:9803536/1‑67 (MQ=255) aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:10840146/1‑67 (MQ=255) aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:23704421/1‑67 (MQ=255) aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:26675455/1‑67 (MQ=255) aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:29215498/1‑67 (MQ=255) aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:326921/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:19045049/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:3189093/1‑67 (MQ=255) acacaggctgctgcgggcaaatgtcttgctgataaggtcttactcctgtcgtaattaattgttcAgc > 1:10728933‑M1/65‑67 (MQ=255) acacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgc > 1:20754389‑M1/65‑67 (MQ=255) acacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgc > 1:17171458‑M1/65‑67 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:30774448‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:26326763‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:29495751‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:31025247‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:12937887‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:9438391‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgatcAgcc < 1:14090519‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatctcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:24657471‑M1/4‑1 (MQ=255) ggCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAgccgc < 1:6617977/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAgccgccc < 1:5029621/67‑2 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:25459260/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:26175502/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:7860720/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:27959439/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:16724325/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:30361155/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:3110243/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:359278/68‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcatatggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:19875950‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:15799774‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:12329892‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:15525075‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:19520058‑M1/9‑1 (MQ=255) ctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt > 1:21871167‑M1/58‑66 (MQ=255) aaTGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCt < 1:23462069/68‑1 (MQ=255) aTGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTa > 1:14896832/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAATGTGTGCCTGCAAGCCGCCGTCTATg > 1:11468956/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:9334240/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:2427380/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:6039529/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:5557249/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:23564094/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:23394636/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:22950069/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:18667920/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:1382520/1‑68 (MQ=255) gcgGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATgg < 1:11284782/67‑1 (MQ=255) gcgGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATgg < 1:16606909/67‑1 (MQ=255) ggTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGtt < 1:13585826/67‑1 (MQ=255) gTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATgg > 1:21305947/1‑64 (MQ=255) gTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTaa > 1:25019339/1‑68 (MQ=255) gTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTaa > 1:25218121/1‑68 (MQ=255) tCACACCCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAg < 1:12707416/68‑1 (MQ=255) tCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACa < 1:17777641/66‑1 (MQ=255) tCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACa < 1:8695832/66‑1 (MQ=255) tCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAg < 1:4189386/68‑1 (MQ=255) acaTCCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTTCAAGCCGCCTTCTATTGTTAAACAAGga < 1:29963465/68‑1 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:23926703/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:30558821/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:1814402/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:27647377/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga < 1:20638383/68‑1 (MQ=255) aaCCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGgaga > 1:15729440/1‑68 (MQ=255) aaCCTGAATAAATTTTCTCAGGCGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGgaga > 1:10063998/1‑68 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata > 1:4422332/1‑68 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata < 1:8115204/68‑1 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata > 1:6987108/1‑68 (MQ=255) tGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATAtt < 1:10539908/68‑1 (MQ=255) tGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATAtt < 1:28607130/68‑1 (MQ=255) tGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATAtt < 1:27237853/68‑1 (MQ=255) gAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATAttt < 1:24398778/68‑1 (MQ=255) gAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATAttt < 1:3985668/68‑1 (MQ=255) aaaTTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTac > 1:8932270/1‑68 (MQ=255) ttttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc > 1:15200467/1‑68 (MQ=255) tcttactcctgtcgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc < 1:12073123‑M1/40‑1 (MQ=255) tcttactcctgtcgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc < 1:18587150‑M1/40‑1 (MQ=255) ttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggcac > 1:22803213/1‑68 (MQ=255) tcAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggcacggc > 1:22082738/1‑68 (MQ=255) cAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:4752924/68‑1 (MQ=255) aGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg > 1:13142325/1‑67 (MQ=255) ctgtcgtaattaattgttcAGCCGCCGGCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcggcg < 1:25914013‑M1/49‑2 (MQ=255) ggCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACggcggc < 1:832477/66‑1 (MQ=255) ggCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTg > 1:18311787/1‑68 (MQ=255) cGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:14474091/67‑1 (MQ=255) cGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:28399078/67‑1 (MQ=255) gAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAAc < 1:23199354/68‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaa < 1:31497940/68‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaa > 1:14649691/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:16242878/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:580083/1‑68 (MQ=255) gtgtGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:11844650/1‑68 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt < 1:22503935/67‑1 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:16033126/66‑1 (MQ=255) gtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaa < 1:20346471/68‑1 (MQ=255) tgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaat > 1:28272134/1‑68 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:7462506/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:21594328/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:16991142/68‑1 (MQ=255) | CAGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAG > CP009273/1505764‑1505898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |