New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1823129160 (0.420)21 (0.060) 9/94 NT 12.6% coding (863/1479 nt) astD succinylglutamic semialdehyde dehydrogenase
?CP009273 = 1823150 156 (0.480)coding (842/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 424 total aligned reads displayed.

CAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAT  >  CP009273/1823063‑1823196
                                                                  |                                                                   
cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc                                                                    <  1:7244364/68‑1 (MQ=255)
 aGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCg                                                                    >  1:18305046‑M1/1‑66 (MQ=255)
    tGCCCGGCGTTAATCGCTTGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                                >  1:15069047/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                                >  1:29492790/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                                >  1:2563265/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt                                                                 <  1:29372826/67‑1 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt                                                                 <  1:15463181/67‑1 (MQ=255)
       ccGGCGTTAATCGCTGGCTGACGGCAACCCGACGAGCAAGAAACGCCTCGCCCTGCGCCCCGCttt                                                               >  1:27587852/1‑66 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                          <  1:7563968/67‑1 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                          <  1:25954342/67‑1 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                          <  1:23642191/67‑1 (MQ=255)
            gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                        >  1:104350/1‑68 (MQ=255)
            gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                        <  1:13354882/68‑1 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                   >  1:19354324/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                   <  1:29547257/68‑1 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                   >  1:5193028/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                   >  1:16772600/1‑68 (MQ=255)
                  ggctggctgACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAcg                                                  <  1:18177501/67‑1 (MQ=255)
                   gctggctgACGGCAACCAGACTAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAcgg                                                 <  1:30392113/68‑1 (MQ=255)
                   gctggctgACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAcgg                                                 <  1:30009992/68‑1 (MQ=255)
                   gctggctgACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAcg                                                  >  1:24037278/1‑67 (MQ=255)
                        cTGACGGCAACCAGACTAGCAAGAAACGCATCGCCCTTCGCCCCGCTTTTCAGCAATAAACGGCggg                                             >  1:1966862‑M2/1‑64 (MQ=255)
                        cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                            <  1:3727452‑M2/68‑5 (MQ=255)
                        cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCggg                                             >  1:6850027‑M2/1‑64 (MQ=255)
                        cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCggg                                             >  1:9321297‑M2/1‑64 (MQ=255)
                         tGACGTCAAACAGACGAGCAAGAAAGGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                           >  1:4106736‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                           >  1:1130015‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                           >  1:28252124‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                           >  1:1455122‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                            >  1:30607999‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                            >  1:26739539‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                            >  1:19300371‑M2/1‑63 (MQ=255)
                            cGGCATCCAGACGAGCAAGTAACGCATGGCCCTGCGCCGCGCTTTTCAGCAATAAACGGCgggcgca                                         >  1:13856328‑M2/1‑60 (MQ=255)
                            cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                         >  1:30856204‑M2/1‑60 (MQ=255)
                            cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                         >  1:20239024‑M2/1‑60 (MQ=255)
                             ggCAACCAGACGAGCGAGAAACGCATCGCCCTGCGGCGGGCTTTTCAGCAATAAACGGCgggcgcagg                                       <  1:22068534‑M2/68‑10 (MQ=255)
                             ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                       >  1:12391682‑M2/1‑59 (MQ=255)
                             ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                       >  1:2288131‑M2/1‑59 (MQ=255)
                             ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                       <  1:10972064‑M2/68‑10 (MQ=255)
                             ggCAACCAGACGAGCAAGAAACGCATCGCCATGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                       <  1:28952488‑M2/68‑10 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcaggg                                      >  1:6029318‑M2/1‑57 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                      <  1:23502935/67‑1 (MQ=255)
                                 aCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCa                                   >  1:16470401/1‑68 (MQ=255)
                                 aCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCa                                   >  1:23235756/1‑68 (MQ=255)
                                  ccAGCCGAGCAAGAAACGCATCGCCCTGCGCCCCGCTGTTCAGCAATAAACGGCgggcgcagggcgat                                  >  1:14712134‑M2/1‑54 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                 <  1:21048983/68‑1 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                 <  1:1001482/68‑1 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                 <  1:4010288/68‑1 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                 <  1:6189515/68‑1 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                 <  1:22668108/68‑1 (MQ=255)
                                     gACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGt                               >  1:28006669/1‑68 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtt                             >  1:21842304‑M1/1‑28 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCATTAAACGGCgggcgcagggcgatgcgtt                             >  1:31631227‑M2/1‑49 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                             >  1:4343614/1‑68 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCGTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGt                               <  1:3287347/66‑1 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttctt                         >  1:26920216‑M1/1‑23 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                        <  1:21419812/68‑1 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                        <  1:18857683/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:5503930/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:12909709/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:6410728/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:8639722/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:27261137/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:11819076/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:17293053/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCCGGCGCAGGTGCAGCGTTGACCGGc                       <  1:18532359/68‑1 (MQ=255)
                                                accgcATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcg                    >  1:26460155‑M2/3‑40 (MQ=255)
                                                aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                    >  1:27759808/1‑68 (MQ=255)
                                                aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                    >  1:26170220/1‑68 (MQ=255)
                                                  cGCATCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcg                    >  1:13037333‑M1/1‑17 (MQ=255)
                                                  cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                  <  1:14422620/68‑1 (MQ=255)
                                                     ctgcaCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGCCaa               <  1:22604751‑M1/63‑1 (MQ=255)
                                                        gCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAAc             >  1:16809061/1‑67 (MQ=255)
                                                         cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg            >  1:8276108/1‑67 (MQ=255)
                                                         aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg            <  1:17585247‑M1/66‑1 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc          >  1:4979803‑M1/1‑9 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc          >  1:24414597‑M1/1‑9 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc          <  1:23039450‑M1/68‑60 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc          <  1:12172930‑M1/68‑60 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc          >  1:17520814‑M1/1‑9 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc          >  1:17218820‑M1/1‑9 (MQ=255)
                                                          CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc          >  1:31454901‑M1/1‑68 (MQ=255)
                                                          CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc          <  1:7906862‑M1/68‑1 (MQ=255)
                                                             GCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGAc       >  1:10658547‑M1/1‑68 (MQ=255)
                                                              cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      >  1:7729739‑M1/1‑5 (MQ=255)
                                                              cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      >  1:4641618‑M1/1‑5 (MQ=255)
                                                              cgcCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      <  1:21164434‑M2/68‑43 (MQ=255)
                                                              CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:25013821‑M1/65‑1 (MQ=255)
                                                              CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:670413‑M1/65‑1 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      >  1:4681342‑M1/1‑4 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      >  1:1778170‑M1/1‑4 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      >  1:11929904‑M1/1‑4 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACt      >  1:15724684‑M1/1‑67 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     >  1:22164294‑M1/1‑68 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     >  1:16411675‑M1/1‑68 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:27080716‑M1/68‑1 (MQ=255)
                                                                cccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag     >  1:15500492‑M1/1‑3 (MQ=255)
                                                                cccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag     >  1:12585134‑M1/1‑3 (MQ=255)
                                                                 ccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcagcc   >  1:25537434‑M1/1‑2 (MQ=255)
                                                                 CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa    >  1:31965481‑M1/1‑67 (MQ=255)
                                                                  |                                                                   
CAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAT  >  CP009273/1823063‑1823196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.