New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1823129160 (0.420)21 (0.060) 9/94 NT 12.6% coding (863/1479 nt) astD succinylglutamic semialdehyde dehydrogenase
?CP009273 = 1823150 156 (0.480)coding (842/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 352 total aligned reads displayed.

GGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTC  >  CP009273/1823085‑1823217
                                                                 |                                                                   
ggCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgg                                                                   >  1:25537434‑M2/1‑66 (MQ=255)
 tcagtcggcgtttgtcacagccggtcaacgctgcaCCTGCGCCCCGCTTTTCAGCAATAAACggcggg                                                                  >  1:17740302‑M1/36‑68 (MQ=255)
  cagtcggcgtttgtcacagccggtcaacgctgcaCCTGCGCCCCGCTTTTCAGCAATAAACggcgggc                                                                 >  1:9497010‑M1/35‑68 (MQ=255)
  cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                 <  1:3727452‑M2/68‑5 (MQ=255)
  cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCggg                                                                  >  1:26761961‑M2/1‑64 (MQ=255)
  cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCggg                                                                  >  1:9321297‑M2/1‑64 (MQ=255)
   tGACGTCAAACAGACGAGCAAGAAAGGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                                                >  1:4106736‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                                                >  1:4641618‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                                                >  1:12085902‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                                                >  1:5404863‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                 >  1:18302211‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                 >  1:15521680‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                 >  1:16444601‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                 >  1:19300371‑M2/1‑63 (MQ=255)
       ggCAACCAGACTAGCAACAAACGAATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                            >  1:8345378‑M2/1‑59 (MQ=255)
       ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                            >  1:24414597‑M2/1‑59 (MQ=255)
       ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                            >  1:12391682‑M2/1‑59 (MQ=255)
       ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                            >  1:22922260‑M2/1‑59 (MQ=255)
       ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                            <  1:11682880‑M2/68‑10 (MQ=255)
       ggCAACCAGACGAGCAACAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                            >  1:23636702‑M2/1‑59 (MQ=255)
         cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                           <  1:1850345/67‑1 (MQ=255)
            ccAGCCGAGCAAGAAACGCATCGCCCTGCGCCCCGCTGTTCAGCAATAAACGGCgggcgcagggcgat                                                       >  1:14712134‑M2/1‑54 (MQ=255)
             cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                      <  1:1001482/68‑1 (MQ=255)
             cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                      <  1:4010288/68‑1 (MQ=255)
               gACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGt                                                    >  1:28006669/1‑68 (MQ=255)
                 cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                                                  >  1:4343614/1‑68 (MQ=255)
                 cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                                                  >  1:21376178/1‑68 (MQ=255)
                 cGAGCAAGAAACGCATCGCCCTGCGCCCCGCGTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGt                                                    <  1:3287347/66‑1 (MQ=255)
                 cGAGCAAGAAACGCAGCGCCCTGCGCCCCGCGTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt                                                   <  1:4749360/67‑1 (MQ=255)
                      aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttctt                                              >  1:14859062‑M2/1‑44 (MQ=255)
                      aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                                             <  1:5908328/68‑1 (MQ=255)
                      aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                                             <  1:13007004/68‑1 (MQ=255)
                      aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg                                              >  1:2267326/1‑67 (MQ=255)
                      aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg                                              >  1:13448270/1‑67 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAACCGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:7119228/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:17293053/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:16208219/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:31866571/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:31562595/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:27261137/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:29764793/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:275990/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCCGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:23052535/68‑1 (MQ=255)
                          aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCCGCGTTGACCGGCtgt                                         >  1:16778671/1‑68 (MQ=255)
                          aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                                         <  1:26453198/68‑1 (MQ=255)
                           aCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgtg                                        >  1:15366926/1‑68 (MQ=255)
                            cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAACCGGCGGGCGCAGGTGCAGCGTTGACCGGCtgtg                                        >  1:7672396/1‑67 (MQ=255)
                            cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgtg                                        >  1:23299239/1‑67 (MQ=255)
                            cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                       <  1:14435844/68‑1 (MQ=255)
                            cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                       <  1:6189922/68‑1 (MQ=255)
                               ctgcaCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCCGCGTTGACCGGCTGTGTCaa                                    <  1:31261948‑M1/63‑1 (MQ=255)
                               ctgcaCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGCCaa                                    <  1:22604751‑M1/63‑1 (MQ=255)
                                tCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaaa                                   <  1:1957487/68‑1 (MQ=255)
                                  gCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAAc                                  >  1:11160334/1‑67 (MQ=255)
                                  gCCCTGCGCCCCGCTTTTCACCAAAAACCGGCgggcgcagggcgatgcgtttcttgctcgtctggt                                   >  1:1192035‑M2/1‑32 (MQ=255)
                                   cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                                 >  1:23885646/1‑67 (MQ=255)
                                   cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                                 >  1:26613277/1‑67 (MQ=255)
                                   cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                                 >  1:12573219/1‑67 (MQ=255)
                                    CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc                               <  1:13923559‑M1/68‑1 (MQ=255)
                                      TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                              <  1:13677689‑M1/67‑1 (MQ=255)
                                       GCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGAc                            >  1:30573507‑M1/1‑68 (MQ=255)
                                        CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                              <  1:670413‑M1/65‑1 (MQ=255)
                                        CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                              <  1:29531185‑M1/65‑1 (MQ=255)
                                        CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                              <  1:21895938‑M1/65‑1 (MQ=255)
                                         GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                          <  1:27080716‑M1/68‑1 (MQ=255)
                                         GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                          <  1:19066309‑M1/68‑1 (MQ=255)
                                         GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                          <  1:19875423‑M1/68‑1 (MQ=255)
                                         GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                          <  1:21105737‑M1/68‑1 (MQ=255)
                                          CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                         <  1:11054058‑M1/68‑1 (MQ=255)
                                          CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                         <  1:22279188‑M1/68‑1 (MQ=255)
                                          CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                         <  1:17143333‑M1/68‑1 (MQ=255)
                                           CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                         >  1:10273439‑M1/1‑67 (MQ=255)
                                           CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCATTGACCGGCTGTGACAAACGCCgactaaa                        <  1:22072468‑M1/68‑4 (MQ=255)
                                              gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg                     >  1:27789311/1‑68 (MQ=255)
                                              gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg                     >  1:5040430/1‑68 (MQ=255)
                                              gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg                     <  1:28339629/68‑1 (MQ=255)
                                                ttttCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtctggttgccgtcagccagcga                   >  1:29472891‑M2/1‑18 (MQ=255)
                                                ttttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgtca                   <  1:30706563/68‑4 (MQ=255)
                                                ttttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt                    <  1:2497324/67‑1 (MQ=255)
                                                gtttCAGCAATATCCGTCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt                    <  1:6391134/66‑1 (MQ=255)
                                                 tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa                  >  1:10744460/1‑68 (MQ=255)
                                                    ctgCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt               <  1:20488249/66‑1 (MQ=255)
                                                    cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt               <  1:25713439/68‑1 (MQ=255)
                                                    cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt               <  1:2881089/68‑1 (MQ=255)
                                                    cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt               <  1:29963778/68‑1 (MQ=255)
                                                    cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt               <  1:25264805/68‑1 (MQ=255)
                                                      gCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATgg             >  1:8924429/1‑68 (MQ=255)
                                                      gCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATgg             >  1:10568029/1‑68 (MQ=255)
                                                        aaTAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGAc           >  1:6579623/1‑68 (MQ=255)
                                                        aaTAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGAc           >  1:26240001/1‑68 (MQ=255)
                                                         aTAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACa          <  1:18011385/68‑1 (MQ=255)
                                                             aCGGCgggcgcagggcgatgcgtttcttgctcgtctggttgccgtcagccagcgattaacgccgggca      >  1:21494991‑M2/1‑5 (MQ=255)
                                                             aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc       >  1:186755/1‑67 (MQ=255)
                                                             aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc       >  1:29166984/1‑67 (MQ=255)
                                                               ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg    <  1:6111013/68‑1 (MQ=255)
                                                               ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg    >  1:5597173/1‑68 (MQ=255)
                                                               ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg    >  1:17561267/1‑68 (MQ=255)
                                                               ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg    <  1:7967498/68‑1 (MQ=255)
                                                                gcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg    >  1:11498913/1‑67 (MQ=255)
                                                                 cgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGt   <  1:13048559/67‑1 (MQ=255)
                                                                 |                                                                   
GGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTC  >  CP009273/1823085‑1823217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.