| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1958516 = | 297 (0.770) | 17 (0.050) | 7/96 | NT | 6.6% | coding (792/2079 nt) | flhA | putative flagellar export pore protein |
| ? | CP009273 | 1958598 = | 223 (0.680) | coding (710/2079 nt) | flhA | putative flagellar export pore protein | |||||
Only 100 of 492 total aligned reads displayed.
TGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTAT > CP009273/1958449‑1958583 | tcatggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:27241368‑M1/1‑1 (MQ=255)tcatggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:23011649‑M1/1‑1 (MQ=255)tcatggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:23681049‑M1/1‑1 (MQ=255)tcatggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:2484229‑M1/1‑1 (MQ=255)tGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCC > 1:19890360‑M1/1‑68 (MQ=255) gAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCC > 1:29732543‑M1/1‑67 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:8164465‑M1/1‑1 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:11318317‑M1/1‑1 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:1562936‑M1/1‑1 (MQ=255) aaaaGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGC > 1:26167922‑M1/1‑68 (MQ=255) ggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacacgcg < 1:5309642‑M1/4‑1 (MQ=255) ggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacacgcg < 1:15319266‑M1/4‑1 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggccaCgcggc < 1:28874526‑M1/6‑1 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:13268628‑M1/6‑1 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:31579611‑M1/6‑1 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:30622321‑M1/6‑1 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:16903796‑M1/6‑1 (MQ=255) aGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGC > 1:13611380‑M1/1‑68 (MQ=255) aGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGC < 1:8811418‑M1/68‑1 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:1410929‑M1/62‑67 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:20396896‑M1/62‑67 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:23399209‑M1/62‑67 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:30800917‑M1/62‑67 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:2476054‑M1/62‑67 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:6634094‑M1/62‑67 (MQ=255) ttCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGa < 1:361154/68‑1 (MQ=255) cACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGaaa > 1:22592462/1‑68 (MQ=255) cACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGaaa > 1:2857330/1‑68 (MQ=255) cACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACAATGACCCCCGCGGCGGTAGaaa > 1:12679772/1‑68 (MQ=255) cATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCG > 1:9163822‑M1/1‑53 (MQ=255) tCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCAcc > 1:14527262/1‑68 (MQ=255) tCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCAcc > 1:3104766/1‑68 (MQ=255) gCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAgc > 1:3405086/1‑68 (MQ=255) gCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAgc < 1:14315454/68‑1 (MQ=255) gCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAgc < 1:12424809/68‑1 (MQ=255) cAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGa < 1:4071948/68‑1 (MQ=255) aCATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAAt < 1:16357592/68‑1 (MQ=255) aTCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAAttt > 1:16429188/1‑68 (MQ=255) ccTGATCGGTGCTGACACGCGTTACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgt > 1:20956424/1‑68 (MQ=255) ccTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgt > 1:7129591/1‑68 (MQ=255) ccTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgt > 1:2134000/1‑68 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc < 1:20098632/68‑1 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc < 1:1796813/68‑1 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgtg < 1:9787455/65‑1 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:25300738/1‑67 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca < 1:15843489/67‑1 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca > 1:16096393/1‑67 (MQ=255) gCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGa < 1:27901457/67‑1 (MQ=255) gCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGa < 1:25927920/67‑1 (MQ=255) aacatggcatgagcatgggccaCGCGGCGGGTGTAATCACCAGCGCCGGAATTTGTGCCGCCAGACCg < 1:11793511‑M1/46‑1 (MQ=255) gACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGt < 1:12831159/68‑1 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGCCCGTc > 1:24173717/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGCCCGTc > 1:22153766/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:30240666/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:4446458/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:4244093/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:32074394/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:3126381/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:7290073/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:7691063/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:28323572/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:24582602/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:27015011/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:11601494/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:12107909/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:14897182/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:25450576/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:17451880/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:10165199/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCg < 1:1887894/68‑1 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGCAATTTGAGCCACCAGACCGTc > 1:10566852/1‑67 (MQ=255) cgcgTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc > 1:10309925/1‑68 (MQ=255) cgcgTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc < 1:8940351/68‑1 (MQ=255) gTAACGATGACCCCCGCGGCGGTAGAAATCACCCGCGCCGGAATTTGTGGCACCAGACCGTCGCCAAt > 1:23234727/1‑68 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:19357496/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:4881/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:31482697/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:27532001/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:29393512/68‑1 (MQ=255) agcatgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:19215180‑M1/56‑1 (MQ=255) gcatgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc < 1:28183299‑M1/58‑1 (MQ=255) gcatgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc < 1:30020079‑M1/58‑1 (MQ=255) cGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc > 1:21532217/1‑68 (MQ=255) cGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc > 1:5960594/1‑68 (MQ=255) gATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCa < 1:20795479/68‑1 (MQ=255) gATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGGCa > 1:29049813/1‑68 (MQ=255) aTGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCaa > 1:3826333/1‑68 (MQ=255) aTGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCaa > 1:10826232/1‑68 (MQ=255) ggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATa < 1:1755353‑M1/62‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:18427034/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:23895126/1‑68 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:27833072/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:26466004/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:8257745/1‑68 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:10670621/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:26674511/1‑68 (MQ=255) acaCCCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCCCCAGACCGTCGCCAAAGGTCAATAGCg < 1:19672796‑M1/65‑1 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt > 1:18655879/1‑68 (MQ=255) caCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt < 1:21984172‑M1/66‑1 (MQ=255) CGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGtat < 1:31825726‑M1/68‑1 (MQ=255) | TGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTAT > CP009273/1958449‑1958583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |