| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2681763 = | 277 (0.720) | 12 (0.040) | 7/94 | NT | 5.2% | coding (400/1335 nt) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
| ? | CP009273 | 2681792 = | 209 (0.650) | coding (371/1335 nt) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK | |||||
Only 100 of 355 total aligned reads displayed.
GATTGCGCCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCG > CP009273/2681696‑2681830 | tttcctcaccaagcctgtcgacaaagacgcgctatatcaggcaattgacgatgcgctggagcaatcc < 1:30202182‑M1/1‑1 (MQ=255) tttcctcaccaagcctgtcgacaaagacgcgctatatcaggcaattgacgatgcgctggagcaatcc < 1:23453407‑M1/1‑1 (MQ=255) tttcctcaccaagcctgtcgacaaagacgcgctatatcaggcaattgacgatgcgctggagcaatcc < 1:19954068‑M1/1‑1 (MQ=255) ttGCGCCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTcgc > 1:19040864/1‑68 (MQ=255) ttGCGCCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTcgc > 1:18146909/1‑68 (MQ=255) ttGCGCCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTcgc > 1:1921735/1‑68 (MQ=255) tGCGCCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTcgcg < 1:29372462/68‑1 (MQ=255) tGCGCCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTcgcg < 1:13107345/68‑1 (MQ=255) cgcCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGcc > 1:22995344/1‑68 (MQ=255) cgcCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGcc > 1:30877345/1‑68 (MQ=255) gcCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGcc < 1:1337411/67‑1 (MQ=255) caccaagcctgtcgacaaagacgcgctatatcaggcaattgacgatgcgctggagcaatcCGCGCCAg > 1:14981393‑M1/61‑68 (MQ=255) caccaagcctgtcgacaaagacgcgctatatcaggcaattgacgatgcgctggagcaatcCGCGCCAg > 1:15614532‑M1/61‑68 (MQ=255) caccaagcctgtcgacaaagacgcgctatatcaggcaattgacgatgcgctggagcaatcCGCGCCAg > 1:3473138‑M1/61‑68 (MQ=255) caccaagcctgtcgacaaagacgcgctatatcaggcaattgacgatgcgctggagcaatcCGCGCCAg > 1:14073667‑M1/61‑68 (MQ=255) caccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGc < 1:26568420/68‑1 (MQ=255) ccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGt < 1:17928672/68‑1 (MQ=255) ccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGt < 1:10987102/68‑1 (MQ=255) ccGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCa > 1:8737668/1‑67 (MQ=255) cgcgCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCa < 1:3568723/66‑1 (MQ=255) cgcgCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCAt < 1:12899278/67‑1 (MQ=255) gcCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCgg < 1:10321308/67‑1 (MQ=255) ccTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtg > 1:4035696/1‑68 (MQ=255) ccTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtg > 1:11079711/1‑68 (MQ=255) ccTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtg > 1:10549687/1‑68 (MQ=255) ccTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtg > 1:28429555/1‑68 (MQ=255) cTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtg > 1:31993654/1‑67 (MQ=255) tCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtggctg > 1:30476103/1‑67 (MQ=255) tCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGaggctg > 1:26122562/1‑67 (MQ=255) aGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGgcgc > 1:26351690/1‑68 (MQ=255) cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:31337194/1‑68 (MQ=255) cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:17336204/1‑68 (MQ=255) cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:7303146/1‑68 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGgcgc < 1:22263882/65‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg < 1:22415433/67‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:13780773/68‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:5290685/68‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:8948572/68‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:1151909/68‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:11142360/68‑1 (MQ=255) aCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGAtt < 1:12542061/68‑1 (MQ=255) aCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGAtt > 1:26252905/1‑68 (MQ=255) gcagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGAtt > 1:27441099/1‑66 (MQ=255) gcagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGc < 1:29964237/68‑1 (MQ=255) gcagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGc < 1:9520094/68‑1 (MQ=255) gcagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGc < 1:18648183/68‑1 (MQ=255) gcagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATAGGTGGCTGGCGCGGCtt > 1:18569879/1‑66 (MQ=255) tgcaTGAGGGGGCTGCGGGTGACATTTGCCTCGCGCCAGAGTTCATCGGTGGCTGGCGCGGATTGCt < 1:28682982/66‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:14363505/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:23140800/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:12316427/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:24739937/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:1208766/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCGGGCGCGGATTGCt < 1:15100489/67‑1 (MQ=255) aTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCa > 1:24175624/1‑67 (MQ=255) gcaattgacgatgcgctggagcaatcCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAgc < 1:7954278‑M1/41‑1 (MQ=255) gcaattgacgatgcgctggagcaatcCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAgc < 1:29733370‑M1/41‑1 (MQ=255) cGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCa > 1:7481711/1‑67 (MQ=255) gggCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCAt < 1:11818366/67‑1 (MQ=255) ggCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCg > 1:16890032/1‑68 (MQ=255) gCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCg > 1:26837815/1‑67 (MQ=255) gCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCg < 1:9325187/67‑1 (MQ=255) cTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGt < 1:12983400/67‑1 (MQ=255) cTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGt < 1:21073506/67‑1 (MQ=255) cTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTc > 1:2388460/1‑68 (MQ=255) tGCGGGTGACAATTGCCTCGCGCCAGCTTTCTTCGGTGGCTGGGGGGTATTGCTCCAGCGCATCGTc < 1:1079336/67‑1 (MQ=255) tGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTc < 1:27862258/67‑1 (MQ=255) ggTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTg > 1:29199951/1‑68 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCTGTTGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:17089875/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:6209384/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:5995775/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:6633823/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:13977822/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:8601914/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:3339817/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:22018924/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:20485964/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:20166861/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:30364025/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:29032055/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:2940482/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:16688843/67‑1 (MQ=255) gACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCt < 1:21717736/68‑1 (MQ=255) gACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCt < 1:15862740/68‑1 (MQ=255) aCAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTg > 1:15245985/1‑68 (MQ=255) aCAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTg > 1:1608347/1‑68 (MQ=255) aCAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTg > 1:31829645/1‑68 (MQ=255) cAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGa < 1:5796606/68‑1 (MQ=255) cAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGa < 1:7799694/68‑1 (MQ=255) cAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGa < 1:11689728/68‑1 (MQ=255) aaTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGat < 1:16368131/68‑1 (MQ=255) agcaatcCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCGGata < 1:25575432‑M1/61‑1 (MQ=255) aatcCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGAtata < 1:4742606‑M1/63‑1 (MQ=255) aatcCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGAtata < 1:3105334‑M1/63‑1 (MQ=255) cTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCCGCGCATCGTCAATTGCCTGATATAgc > 1:701881/1‑67 (MQ=255) cTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgc > 1:26706263/1‑67 (MQ=255) cTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgc > 1:25856299/1‑67 (MQ=255) cTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgc > 1:22885752/1‑67 (MQ=255) cCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgcgc < 1:5533417‑M1/67‑1 (MQ=255) cCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgcgc < 1:4283074‑M1/67‑1 (MQ=255) | GATTGCGCCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCG > CP009273/2681696‑2681830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |