| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2681763 = | 277 (0.720) | 12 (0.040) | 7/94 | NT | 5.2% | coding (400/1335 nt) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
| ? | CP009273 | 2681792 = | 209 (0.650) | coding (371/1335 nt) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK | |||||
Only 100 of 354 total aligned reads displayed.
CAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAAC > CP009273/2681725‑2681858 | cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:31337194/1‑68 (MQ=255)cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:204755/1‑68 (MQ=255)cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:7303146/1‑68 (MQ=255)cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:17336204/1‑68 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg < 1:22415433/67‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:25210643/68‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:8779950/68‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:19765654/68‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:14300311/68‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGGGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:9688455/68‑1 (MQ=255) aCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGAtt < 1:12542061/68‑1 (MQ=255) tatatcaggcaattgacgatgcgctggagcaatccgcgccagccaccgatgaacgctggcgcgGAtt < 1:3105334‑M2/4‑1 (MQ=255) gcagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGc < 1:1544279/68‑1 (MQ=255) gcagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATAGGTGGCTGGCGCGGCtt > 1:18569879/1‑66 (MQ=255) cagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGc > 1:4064209/1‑67 (MQ=255) tgcaTGAGGGGGCTGCGGGTGACATTTGCCTCGCGCCAGAGTTCATCGGTGGCTGGCGCGGATTGCt < 1:28682982/66‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:1208766/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:14699954/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:15753954/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:23140800/67‑1 (MQ=255) tCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAgc > 1:4260320/1‑68 (MQ=255) tCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAgc > 1:30160093/1‑68 (MQ=255) tCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAgc > 1:11274323/1‑68 (MQ=255) gcaattgacgatgcgctggagcaatcCGCGCCCGCGGTCATCGGTGGCTGGCGCGGATTGCTCCAgc < 1:30393651‑M1/41‑1 (MQ=255) cGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCa > 1:7481711/1‑67 (MQ=255) gggCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATc > 1:14817292/1‑68 (MQ=255) ggCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCg > 1:16890032/1‑68 (MQ=255) gCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCg > 1:5398346/1‑67 (MQ=255) gCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCg < 1:2323867/67‑1 (MQ=255) cTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGt < 1:23458626/67‑1 (MQ=255) tGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTc < 1:1612039/67‑1 (MQ=255) tGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTc < 1:2793207/67‑1 (MQ=255) tGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTc < 1:1276452/67‑1 (MQ=255) tGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTc < 1:9342223/67‑1 (MQ=255) tGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCa > 1:30287116/1‑68 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCCGCGCATCGTCAATTg > 1:15176682/1‑66 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:1111021/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:1304941/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:13977822/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:1297808/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:26431371/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:26645904/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:2940482/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:16688843/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:32060896/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:27046857/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:6112061/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:12196738/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:29392673/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:29032055/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:20166861/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:20015277/67‑1 (MQ=255) gctggagcaatccgcgccagccaccgatgaacgctggcgcgGATTGCTCCAGCGCATCGTCAATTGc < 1:7954278‑M2/26‑1 (MQ=255) gctggagcaatccgcgccagccaccgatgaacgctggcgcgGATTGCTCCAGCGCATCGTCAATTGc < 1:29733370‑M2/26‑1 (MQ=255) gACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCt < 1:5931033/68‑1 (MQ=255) gACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCt < 1:15862740/68‑1 (MQ=255) tggagcaacccgcgccagccaccgatgaccgctggcgcgGATTGCTCCAGCGCATCGTCAATTGCCt < 1:15071700‑M2/28‑1 (MQ=255) aCAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTg > 1:31566640/1‑68 (MQ=255) aCAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTg > 1:31829645/1‑68 (MQ=255) cAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGa < 1:23853063/68‑1 (MQ=255) cAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGa < 1:26801491/68‑1 (MQ=255) cAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGa < 1:11689728/68‑1 (MQ=255) aaTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGat < 1:30773072/68‑1 (MQ=255) aaTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGat > 1:21322140/1‑68 (MQ=255) aaTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGat < 1:7176747/68‑1 (MQ=255) aaTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGat < 1:16368131/68‑1 (MQ=255) aTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCCGCGCATCGTCAATTGCCTGata > 1:3912419/1‑68 (MQ=255) gCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGAtata > 1:5779792/1‑67 (MQ=255) gCCTCGCGCCAGCGTTCATCGGTGGCTGGAGCGGATTGCTCCAGCGCATCGTCAATTGCCTGAtata > 1:18440640/1‑67 (MQ=255) aatcCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGAtata < 1:4742606‑M1/63‑1 (MQ=255) tcCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgc < 1:22937145‑M1/65‑1 (MQ=255) cTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgc > 1:25856299/1‑67 (MQ=255) cTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgc > 1:8951180/1‑67 (MQ=255) cTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCAGCGTCAATTGCCTGATATAgc > 1:510572/1‑67 (MQ=255) cCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgcgc < 1:24156115‑M1/67‑1 (MQ=255) CGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGcgcg > 1:6357228‑M1/1‑68 (MQ=255) gccagccaccgatgaacgctggcgcgGATTGCCCCAGCGCATCGTCAATTGCCTGATATAGCGCGTc < 1:8143277‑M2/41‑1 (MQ=255) GCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCt < 1:24614555‑M1/68‑1 (MQ=255) GCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCt < 1:3406417‑M1/68‑1 (MQ=255) GCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCt < 1:18925800‑M1/68‑1 (MQ=255) CCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCtt < 1:10746635‑M1/68‑1 (MQ=255) CCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCtt < 1:22225586‑M1/68‑1 (MQ=255) CCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCtt < 1:20914349‑M1/68‑1 (MQ=255) CCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCtt < 1:11560305‑M1/68‑1 (MQ=255) CAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCtt > 1:26209042‑M1/1‑67 (MQ=255) CAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCtt > 1:10144494‑M1/1‑67 (MQ=255) CAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCtt > 1:6867510‑M1/1‑67 (MQ=255) aTCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAg > 1:55129/1‑68 (MQ=255) tCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAgg < 1:28958855/68‑1 (MQ=255) tCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAgg < 1:10832796/68‑1 (MQ=255) tCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAgg < 1:17289334/68‑1 (MQ=255) tCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAgg < 1:7782211/68‑1 (MQ=255) tCGGGGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAgg < 1:8578100/68‑1 (MQ=255) ggTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCt < 1:30585484/68‑1 (MQ=255) ggTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCt > 1:13790770/1‑68 (MQ=255) ggTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCt > 1:21775566/1‑68 (MQ=255) gggctggcGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCtt < 1:10492549/66‑1 (MQ=255) ggctggcGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTgg < 1:17872925/68‑1 (MQ=255) gcgGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGaa > 1:12352448‑M2/4‑68 (MQ=255) gGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGaaa < 1:28417347‑M2/66‑1 (MQ=255) | CAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAAC > CP009273/2681725‑2681858 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |