| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2845465 = | 227 (0.590) | 18 (0.050) | 10/96 | NT | 6.5% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 320 (0.970) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
Only 100 of 405 total aligned reads displayed.
TTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGT > CP009273/2845398‑2845532 | tAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCGGGATGACG > 1:26866359‑M1/1‑68 (MQ=255) tAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCG > 1:10054337‑M1/1‑68 (MQ=255) cggcggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgc < 1:20048441‑M1/4‑1 (MQ=255) cggcggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgc < 1:21734514‑M1/4‑1 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:23740902‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:28029178‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:14963430‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:31820941‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:18195211‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:5598590‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:8156112‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:11280610‑M1/1‑67 (MQ=255) gAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC < 1:26654356‑M1/68‑1 (MQ=255) cggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcTGgcgc > 1:44255‑M1/62‑67 (MQ=255) cggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgc > 1:3041272‑M1/62‑67 (MQ=255) cggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgc > 1:11108093‑M1/62‑67 (MQ=255) ggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcccatgttcCGgcgcgc < 1:3107976‑M1/8‑1 (MQ=255) ggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgcgc < 1:4213709‑M1/8‑1 (MQ=255) gCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:23634393‑M1/1‑65 (MQ=255) ccGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:14767231‑M1/1‑64 (MQ=255) cGAAGCACGCTACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:9731034/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:10406194/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:27820190/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:28520915/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:29105553/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:3725542/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:5143659/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:6979739/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:7641521/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:9092646/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:16892035/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:13599454/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:32096871/66‑1 (MQ=255) cACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGGAt > 1:5475200/1‑68 (MQ=255) gcgACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGc > 1:18505649/1‑68 (MQ=255) cgACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCg > 1:27401731/1‑68 (MQ=255) acTCTCGACGCCTTCCAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:783271/68‑1 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:28738506/68‑1 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:13999125/68‑1 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGGTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:10880037/68‑1 (MQ=255) cGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaat > 1:3390524/1‑68 (MQ=255) aCGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataa > 1:2294732/1‑68 (MQ=255) aCGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataa > 1:6000617/1‑68 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGGGCggtattgatcaacaaaacgcatta > 1:19781998‑M1/1‑44 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:22717753/1‑68 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:3142899/1‑68 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:29913917/1‑68 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:27065059/1‑68 (MQ=255) ccTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc > 1:7256015/1‑68 (MQ=255) ccTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc > 1:26330954/1‑68 (MQ=255) cTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc < 1:17336874/67‑1 (MQ=255) ttACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGt < 1:9487763/68‑1 (MQ=255) cAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGtttt < 1:29375009/68‑1 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:24980408/1‑68 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt < 1:3413858/68‑1 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:23892897/1‑68 (MQ=255) aaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgtt < 1:21020445/68‑1 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:22197907/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:21623842/1‑68 (MQ=255) aCAGGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:20665732/1‑68 (MQ=255) cATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtga < 1:11762326/68‑1 (MQ=255) cATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtga < 1:17668907/68‑1 (MQ=255) cATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtga < 1:15374586/68‑1 (MQ=255) aTGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtgaa > 1:6222639/1‑67 (MQ=255) tGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtgatg > 1:3530324/1‑68 (MQ=255) tttGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGaa > 1:13011310/1‑68 (MQ=255) tttGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGaa > 1:24594091/1‑68 (MQ=255) ctgcatcacctgttcCGGCGCGCTGGTGGATGGCGAGGTAAAATAGTGGGTTTTTTTGATGAATATc < 1:3018921‑M1/52‑1 (MQ=255) cGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATc > 1:25104690/1‑67 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:24366747‑M2/1‑63 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:21500821‑M2/1‑63 (MQ=255) atcacctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATcgcgc < 1:19618570‑M1/56‑1 (MQ=255) gCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc < 1:8885843‑M2/68‑8 (MQ=255) gCCGGATGTAGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc < 1:12215691‑M2/68‑8 (MQ=255) acctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCg < 1:8391722‑M1/60‑1 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccg > 1:24024880‑M2/1‑59 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccg > 1:28910179‑M2/1‑59 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCgg < 1:2647295/68‑1 (MQ=255) ggATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccgac > 1:26165828‑M2/1‑58 (MQ=255) ggATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:13832/68‑1 (MQ=255) ctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:18721416‑M1/62‑1 (MQ=255) tgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCgccgaca < 1:1660472‑M1/63‑4 (MQ=255) aTGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAAc > 1:14463479/1‑68 (MQ=255) tGTCGGGGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACa > 1:23234342/1‑68 (MQ=255) tGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccgacat > 1:12067929‑M2/1‑55 (MQ=255) tcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:12578955‑M1/66‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGATCAg < 1:15552866/68‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:9342476/68‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:12030033/68‑1 (MQ=255) gTCGGCGCGCGGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:20544218/68‑1 (MQ=255) tCGGCGCGCgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgagatccg > 1:3365217‑M1/1‑9 (MQ=255) cGGCGCGCgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgacatccgg < 1:3087815‑M1/68‑61 (MQ=255) cGGCGCGCgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgacatccg > 1:15951825‑M1/1‑8 (MQ=255) cGGCGCGCgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgacatccg > 1:16373073‑M1/1‑8 (MQ=255) cGGCGCGCgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgacatccg > 1:30718206‑M1/1‑8 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAgg > 1:14270297‑M1/1‑67 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt > 1:25666836‑M1/1‑68 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt < 1:6682978‑M1/68‑1 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt > 1:21382795‑M1/1‑68 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt > 1:5000859‑M1/1‑68 (MQ=255) | TTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGT > CP009273/2845398‑2845532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |