| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3385677 | 244 (0.630) | 12 (0.040) | 6/98 | NT | 5.3% | noncoding (243/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | = 3385694 | NA (NA) | noncoding (260/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
Only 100 of 411 total aligned reads displayed.
CAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGG > CP009273/3385610‑3385744 | taCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATa > 1:21717559/2‑68 (MQ=25) aCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:20626818/68‑1 (MQ=35) aCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:31371002/68‑1 (MQ=35) aCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:20875350/68‑1 (MQ=35) aCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:20023843/68‑1 (MQ=35) aCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:12485632/68‑1 (MQ=35) aCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:27385024/68‑1 (MQ=35) aCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:29272163/68‑1 (MQ=35) aCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:28551224/68‑1 (MQ=35) aCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:5471528/68‑1 (MQ=35) ggCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAg > 1:29977595/1‑67 (MQ=35) ggCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAg > 1:26701510/1‑67 (MQ=35) ggCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 1:13339548/68‑1 (MQ=35) ggCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 1:30218252/68‑1 (MQ=35) gCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTGCGTTTGTAGGCCTGATAAGAc > 1:18762393/1‑68 (MQ=25) gCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCGGTTTGTAGGCCTGATAAGAc > 1:25101736/1‑68 (MQ=25) gCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:10782870/1‑68 (MQ=35) gCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:283371/1‑68 (MQ=35) gTTATGTTCCGTTTGTAGGCCTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataacc > 1:15278150‑M1/1‑25 (MQ=255) gTTATGTTCCGTTTGTAGGCCTGATaaggcgctgtgcgtcttttcaggcctacaaacggaacataacc > 1:32010244‑M1/1‑25 (MQ=255) aTGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTg < 1:12006884/68‑1 (MQ=31) aTGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTg > 1:7999180/1‑68 (MQ=31) tGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa > 1:28723173/1‑68 (MQ=33) tGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa > 1:10350975/1‑68 (MQ=33) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa > 1:3576343/1‑67 (MQ=33) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGTGAACGGCTGCCGGATGCGGCGTGAAc > 1:12657278/1‑67 (MQ=255) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:6985261/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:19464010/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:25803398/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:4031470/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:16449726/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:8194434/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:8550485/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:10708249/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:28956620/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:3372436/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:24854719/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:454957/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:29038327/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:6362926/68‑1 (MQ=35) cccGTTTGAACGCCAGTAAACACGCCCAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:5742918/67‑1 (MQ=11) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGc < 1:30962486/68‑1 (MQ=35) cGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGNTGCCGGATGCGGCGTGAACGc > 1:9713344/1‑67 (MQ=25) cGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGcc < 1:11921013/68‑1 (MQ=35) cGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGcc < 1:7705099/68‑1 (MQ=35) cGTTTGTAGGCCTGATAACACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGc < 1:12156933/67‑1 (MQ=25) ttGTCGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCt < 1:11355472/67‑1 (MQ=255) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTa < 1:11216201/68‑1 (MQ=40) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTa < 1:7264286/68‑1 (MQ=40) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTa > 1:21428027/1‑68 (MQ=40) ttGTAGGCCTGATAACACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCt < 1:2076270/67‑1 (MQ=255) tGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt < 1:18912366/68‑1 (MQ=40) tGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt < 1:14140460/68‑1 (MQ=40) gTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt > 1:11108101/1‑67 (MQ=40) tAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATcc > 1:22058554/1‑68 (MQ=40) tAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATcc > 1:13707219/1‑68 (MQ=40) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGCACGCCCTATCCg > 1:16007737/1‑67 (MQ=255) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCg > 1:15608489/1‑67 (MQ=40) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCg > 1:23222073/1‑67 (MQ=40) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCg > 1:9064698/1‑67 (MQ=40) gCCTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcg < 1:29539219‑M1/67‑61 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:31915053‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:18080897‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:18407385‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:27985955‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:4347088‑M1/1‑6 (MQ=255) ccTGATTAGACGCACAGCGTCGGATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa < 1:14701362/66‑1 (MQ=255) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa < 1:915434/66‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa < 1:10272581/66‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:1057283/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa < 1:10917764/66‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:13888671/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa < 1:14588728/66‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:17578408/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:2534665/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:20479454/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa < 1:21261766/66‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:23122012/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:27502693/67‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:18965030/67‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:1922167/67‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:5951482/67‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:31203468/67‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:24631792/67‑1 (MQ=40) cTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgttt > 1:10136310‑M1/1‑5 (MQ=255) cTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgttt > 1:23373634‑M1/1‑5 (MQ=255) cTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgttt > 1:30610008‑M1/1‑5 (MQ=255) cTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt < 1:24368989‑M1/67‑63 (MQ=255) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCTGGATGCGGCGTGAACGCCCTATCCGACCt < 1:27133447/68‑1 (MQ=255) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCt < 1:26203722/68‑1 (MQ=40) gATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttac > 1:1964427‑M1/1‑3 (MQ=255) gATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTAc < 1:17124819/68‑1 (MQ=40) aTgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttac > 1:23949604‑M1/1‑2 (MQ=255) tgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttacg > 1:31616902‑M1/1‑1 (MQ=255) tgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttacg > 1:1302908‑M1/1‑1 (MQ=255) tgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttacg > 1:27735390‑M1/1‑1 (MQ=255) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACg < 1:5233541/67‑1 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACg < 1:4915261/67‑1 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACg < 1:26278052/67‑1 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACg < 1:22391757/67‑1 (MQ=40) | CAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGG > CP009273/3385610‑3385744 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |