| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3385677 | 244 (0.630) | 12 (0.040) | 6/98 | NT | 5.3% | noncoding (243/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | = 3385694 | NA (NA) | noncoding (260/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
Only 100 of 447 total aligned reads displayed.
ATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGT > CP009273/3385656‑3385760 | tGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa > 1:28723173/1‑68 (MQ=33) tGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa > 1:24535399/1‑68 (MQ=33) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa > 1:12768872/1‑67 (MQ=33) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa > 1:3576343/1‑67 (MQ=33) tgggTTTTTTGGCCTGATAAGACGCACAGGGTCGCATCTGGAAACGGCTGCCGGATGCGGCGTGAACg < 1:19083935/65‑1 (MQ=11) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:3027558/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:19464010/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:13637442/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:11322396/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:29206361/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:27567045/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:20817686/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:6362926/68‑1 (MQ=35) tCCGTTTGTACTCCTGATAACACCCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:30963180/68‑1 (MQ=11) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGc < 1:21537030/68‑1 (MQ=35) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGc < 1:19799127/68‑1 (MQ=35) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGc < 1:17232447/68‑1 (MQ=35) ccGTTTGTAGGCCTGAAAAGACGCACAGCGACGCATCTGGCAACGGCTGCCGGATGCGGCGTGAACGc < 1:25311298/68‑1 (MQ=11) cGTTTGTCGGCCTGCTAAGACCCACACCTACGCCTCAGGCAACGGCTGCCGGATGCGGCGTGAACGcc < 1:11535382/68‑1 (MQ=11) cGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGcc < 1:30720269/68‑1 (MQ=35) cGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGcc < 1:10209368/68‑1 (MQ=35) cGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGcc < 1:1295768/68‑1 (MQ=35) cGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGcc < 1:7705099/68‑1 (MQ=35) cGTTTGTAGGCCTGATAAGACGCACACCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGcc < 1:16767934/68‑1 (MQ=25) cGTTTGTAGGCCTGATAACACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGc < 1:12156933/67‑1 (MQ=25) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGTCAACGGCTGCCGGATGCGGCGTGAACGCCCt < 1:14111976/67‑1 (MQ=255) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCt < 1:28372466/67‑1 (MQ=39) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTa < 1:7904631/68‑1 (MQ=40) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTa < 1:7264286/68‑1 (MQ=40) tGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt < 1:10285537/68‑1 (MQ=40) gTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt > 1:11108101/1‑67 (MQ=40) ggCCTGATAAGACGCACAGCGTCGCATCAGTCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCg > 1:20589108/1‑67 (MQ=255) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGCACGCCCTATCCg > 1:16007737/1‑67 (MQ=255) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCg > 1:18912827/1‑67 (MQ=40) ccTGATAAGACGCAGAGCGTCGCATCAGGAAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:23231099/67‑1 (MQ=255) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCCTATCCGa < 1:26717975/66‑1 (MQ=25) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:27468851/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:28967723/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa < 1:18306957/66‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:17578408/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:23122012/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa < 1:29310670/66‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:11994630/67‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:22390457/67‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:30168377/67‑1 (MQ=40) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCt < 1:26203722/68‑1 (MQ=40) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCt > 1:9132253/1‑68 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACg < 1:26278052/67‑1 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACg < 1:23991044/67‑1 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACg < 1:1077047/67‑1 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACg < 1:7017852/67‑1 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACg < 1:5216145/67‑1 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACg < 1:20217404/67‑1 (MQ=40) aaGACGCACAGCGTGGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:24866873/68‑1 (MQ=255) aaGACGCACAGCGTCGCATCAGGCACCGGCTGCCGGATGCGGCGTGAACGCCCTATCCGCCCTACGGt > 1:23584568/1‑68 (MQ=255) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTTAACGCCCTATCCGACCTACGGt < 1:31203295/68‑1 (MQ=25) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:539802/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:30872395/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:2726081/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:25622288/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:31881074/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:23408559/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:21326440/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:4069996/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:18658799/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt > 1:15350658/1‑68 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGAAGGATGCGGCGTGAACTCCCTATCCGACCTACGGt < 1:31309203/68‑1 (MQ=14) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGACCGCCCTATCCGACCTACGGTTATg > 1:3245693/1‑68 (MQ=255) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATg > 1:10130377/1‑68 (MQ=40) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATg > 1:4544759/1‑68 (MQ=40) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATg > 1:9393980/1‑68 (MQ=40) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATg > 1:10977515/1‑68 (MQ=40) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATg > 1:14764770/1‑68 (MQ=40) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATg > 1:15089408/1‑68 (MQ=40) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATg > 1:29645546/1‑68 (MQ=40) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATg > 1:19262948/1‑68 (MQ=40) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGATATg > 1:5618318/1‑68 (MQ=255) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATg > 1:4948037/1‑68 (MQ=255) cGCACAGCGTCGCATCAGGCAACGGCTGCAGGATGCGGCGTGAACGCCCTATCCGACCGACGGTTATg > 1:809622/1‑68 (MQ=14) tcacaGCGTCGCTTCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:25495181/67‑1 (MQ=255) gCACAGCGTCGCTTCTGGCTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:10504569/68‑1 (MQ=14) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:16360454/68‑1 (MQ=40) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:5990611/68‑1 (MQ=40) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:19539261/68‑1 (MQ=40) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:4225945/68‑1 (MQ=40) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:22086138/68‑1 (MQ=40) cacaGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt > 1:25158932/1‑67 (MQ=40) acaGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt > 1:8489455/1‑66 (MQ=40) acaGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt > 1:8969967/1‑66 (MQ=40) acaGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt > 1:27959003/1‑66 (MQ=40) aGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTg > 1:5765837/1‑68 (MQ=255) aGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTg > 1:14315486/1‑68 (MQ=255) aGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTg > 1:26987399/1‑68 (MQ=255) gCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTg > 1:21197822/1‑67 (MQ=255) gCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTg > 1:6689858/1‑67 (MQ=255) tCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTc > 1:27751186/1‑68 (MQ=255) cGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCg < 1:21738278/68‑1 (MQ=255) cGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCg < 1:4777511/68‑1 (MQ=255) gCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTAGGGTTAGGTTCTGGCTCGt > 1:13825416/1‑68 (MQ=255) gCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGt > 1:12590444/1‑68 (MQ=255) | ATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGT > CP009273/3385656‑3385760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |