| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3701734 = | NA (NA) | 21 (0.060) | 8/96 | NT | 15.1% | intergenic (‑669/+242) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701742 = | 138 (0.360) | intergenic (‑677/+234) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 331 total aligned reads displayed.
GGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > CP009273/3701669‑3701786 | ccGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGc < 1:18808270/67‑1 (MQ=255) ccGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGc < 1:7444463/67‑1 (MQ=255) ccGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGc < 1:15628709/67‑1 (MQ=255) ccGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGc < 1:5435909/67‑1 (MQ=255) ccGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGc > 1:14298036/1‑67 (MQ=255) ccGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGc < 1:31149516/67‑1 (MQ=255) cGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGccc < 1:31662831/68‑1 (MQ=255) cGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGccc < 1:6505307/68‑1 (MQ=255) cGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGccc < 1:31489537/68‑1 (MQ=255) cGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGcc < 1:20799625/67‑1 (MQ=255) gCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGccccc > 1:12155447/1‑68 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCgg > 1:19416307/1‑68 (MQ=255) caTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGa < 1:7707168/68‑1 (MQ=255) caTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGa > 1:9063236/1‑68 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:15463465/68‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:21946523/68‑1 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGtt < 1:29522767/68‑1 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGtt < 1:15948737/68‑1 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGtt < 1:30967138/68‑1 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGtt < 1:7101560/68‑1 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt > 1:17383690/1‑67 (MQ=255) ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtc > 1:23802446/1‑67 (MQ=255) ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtc > 1:4511846/1‑67 (MQ=255) ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCGGCCCCCGGAGGTtc > 1:14516342/1‑67 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtctc > 1:17880578/1‑68 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtctc > 1:29166783/1‑68 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtct < 1:31399312/67‑1 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt < 1:25553283/68‑1 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt < 1:28161157/68‑1 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt < 1:12629788/68‑1 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt < 1:877915/68‑1 (MQ=255) tGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc < 1:3744563/67‑1 (MQ=255) tGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc < 1:26296572/67‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc‑‑c > 1:27713315/1‑67 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc‑‑c > 1:11864738/1‑67 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc‑‑c > 1:4206448/1‑67 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc‑‑c > 1:30299091/1‑67 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑Ct < 1:27881377/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑Ct < 1:16100759/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑Ct < 1:6133538/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑Ct < 1:22550897/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑Ct < 1:2064822/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑Ct < 1:26996637/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGGCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑Ct < 1:1496662/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGGCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑Ct < 1:17161787/68‑1 (MQ=255) cGCTGCCGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCAt > 1:4771867/1‑67 (MQ=255) cGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATg > 1:22368711/1‑68 (MQ=255) gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGa < 1:15299399/68‑1 (MQ=255) gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGa > 1:25301059/1‑68 (MQ=255) gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGa > 1:19156032/1‑68 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGc > 1:13129861/1‑68 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGc > 1:30651946/1‑68 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGc > 1:6739829/1‑68 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGc > 1:29975847/1‑68 (MQ=255) cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGAt > 1:27347832/1‑67 (MQ=255) ttATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGc < 1:18270679/68‑1 (MQ=255) tATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCa > 1:6240302/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAA > 1:3504995‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAA > 1:399601‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAA > 1:19598695‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAA > 1:7870528‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAA > 1:16289163‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAA > 1:14001336‑M1/1‑68 (MQ=255) cAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAA > 1:16717030‑M1/1‑68 (MQ=255) cAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAA > 1:11039774‑M1/1‑68 (MQ=255) ggCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAA > 1:9408323‑M1/1‑68 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAg < 1:29659379‑M1/66‑2 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:4386660‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:5072575‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG < 1:5573121‑M1/67‑1 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG < 1:9556862‑M1/67‑1 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:26197239‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:2341770‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:16526416‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:1854600‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:21455453‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:13446181‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:23575179‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:25671839‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTATCATC‑‑CTCCTGAGCTGCAGATGCAAAAAAG > 1:20263859‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGACCCCGGAGGTTCTCATC‑‑ATCATGAGCTGCAGATGCAAAAAAG > 1:28330096‑M1/1‑67 (MQ=255) aCGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTG < 1:18652489‑M1/68‑1 (MQ=255) gtcgagtcgaCCCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:11575781‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCTCATGAGCTGCAGATGCAAAAAAGCCT > 1:9644424‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:11624282‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:24225587‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:2603042‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:11995472‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:8405086‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:21037887‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:7294455‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:3184135‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGACTGC > 1:28822778‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCGCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:8977393‑M1/1‑67 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:1017755‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:26793561‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCT < 1:4981010‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:21305375‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:22481767‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:5895915‑M1/67‑1 (MQ=255) | GGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > CP009273/3701669‑3701786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |