| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3701734 = | NA (NA) | 21 (0.060) | 8/96 | NT | 15.1% | intergenic (‑669/+242) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701742 = | 138 (0.360) | intergenic (‑677/+234) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 400 total aligned reads displayed.
CACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCA > CP009273/3701675‑3701794 | aaagcctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagg < 1:16490813‑M2/1‑1 (MQ=255)aaagcctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagg < 1:10096561‑M2/1‑1 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCgg > 1:6225631/1‑68 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCgg > 1:19416307/1‑68 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCgg > 1:14872995/1‑68 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCg < 1:5068987/67‑1 (MQ=255) cctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg > 1:24915331‑M2/64‑68 (MQ=255) cctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg > 1:8267569‑M2/64‑68 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:12333575/68‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:2681079/68‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:21946523/68‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:19075865/68‑1 (MQ=255) gtcctcaacgtgcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg < 1:2912528‑M2/5‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg < 1:7655305‑M2/5‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg < 1:24112659‑M2/5‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg < 1:5264736‑M2/5‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAg < 1:29001551‑M2/4‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGt < 1:24233923‑M2/6‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGt < 1:31540116‑M2/6‑1 (MQ=255) tgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGtt < 1:5680445‑M2/7‑1 (MQ=255) tgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGtt < 1:15587050‑M2/7‑1 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGtt < 1:29535105/68‑1 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt > 1:398957/1‑67 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt > 1:31810684/1‑67 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt > 1:17383690/1‑67 (MQ=255) ctgctcaacgagcaggctttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg < 1:1111050‑M2/5‑1 (MQ=255) ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGACCCTCCCTGCCCCCGGAGGTtc > 1:641472/1‑67 (MQ=255) ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtc > 1:4511846/1‑67 (MQ=255) ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCGGCCCCCGGAGGTtc > 1:14516342/1‑67 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtct < 1:31399312/67‑1 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt < 1:28161157/68‑1 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt < 1:9408221/68‑1 (MQ=255) aacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGTTCTCAt < 1:15143392‑M2/12‑1 (MQ=255) aacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGTTCTCAt < 1:11856075‑M2/12‑1 (MQ=255) aacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGTTCTCAt < 1:2326912‑M2/12‑1 (MQ=255) tGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt > 1:13551361/1‑66 (MQ=255) tGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc < 1:3744563/67‑1 (MQ=255) tGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc < 1:26296572/67‑1 (MQ=255) gCGACGCTGCCGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc‑‑c > 1:8719659/1‑67 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc‑‑c > 1:2770416/1‑67 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc‑‑c > 1:30299091/1‑67 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑Ct < 1:25630611/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑Ct < 1:6133538/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑Ct < 1:27881377/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGGCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑Ct < 1:17161787/68‑1 (MQ=255) gcaggcttttttgcatctgcagctcatgagggatgagaacctccgggggcagGGAGGTTCTCATC‑‑Ct < 1:9182645‑M2/15‑1 (MQ=255) gtcttttttgcatctgcagctcatgaggctgagaacctccgggggcagGGAGGTTCTCATC‑‑CTCATGa < 1:29243143‑M2/20‑1 (MQ=255) gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGa > 1:15725621/1‑68 (MQ=255) gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGa > 1:25301059/1‑68 (MQ=255) cttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGTTCTCATC‑‑CTCATGa < 1:12831144‑M2/20‑1 (MQ=255) ttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGTTCTCATC‑‑CTCATGAGCt < 1:20217426‑M2/23‑1 (MQ=255) ttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGTTCTCATC‑‑CTCATGAGCTGc < 1:23763942‑M2/25‑1 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGc > 1:30651946/1‑68 (MQ=255) gTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGa > 1:31113773/1‑68 (MQ=255) cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGAt > 1:5923897/1‑67 (MQ=255) cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGAt < 1:9545257/67‑1 (MQ=255) ttATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGc < 1:18270679/68‑1 (MQ=255) tATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCa < 1:6979218/68‑1 (MQ=255) aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCaa < 1:487597/68‑1 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAA > 1:22726179‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAA > 1:10294718‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAA > 1:22540858‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAA > 1:16289163‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAA > 1:19598695‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCAGGAGCTGCAGATGCAAA > 1:4681794‑M1/1‑68 (MQ=255) cAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAA > 1:16717030‑M1/1‑68 (MQ=255) cAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAA > 1:32026537‑M1/1‑68 (MQ=255) gCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAA > 1:29974559‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:20985099‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:1854600‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:5521449‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:6730259‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:15954744‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:4100799‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:4386660‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:1169227‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAG > 1:26197239‑M1/1‑67 (MQ=255) aCGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTG < 1:18652489‑M1/68‑1 (MQ=255) gtcgagtcgaCCCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:11575781‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCTCATGAGCTGCAGATGCAAAAAAGCCT > 1:9644424‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGCGCTGCAGATGCAAAAAAGCCTGC > 1:27053150‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:28427312‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:11995472‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:13213395‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:14061475‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:17862669‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:19265372‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:7226974‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:25781431‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:2603042‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCGCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:8977393‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTCCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:7744932‑M1/1‑67 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTTCAGATGCAAAAAAGCCTGCTC < 1:29513271‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGC‑AAAAAGCCTGCTC < 1:21465327‑M1/67‑1 (MQ=255) ctagtcgaacCTCCCTGCCCCCGGATGTTCTCATC‑‑CTCATTAGCTGCAGATGCAAAAAAGCCTGCTC < 1:20457524‑M1/65‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:21305375‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:7361302‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:22445565‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:23518232‑M1/67‑1 (MQ=255) gtcgaACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAA > 1:15389983‑M1/1‑54 (MQ=255) | CACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATC‑‑CTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCA > CP009273/3701675‑3701794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |