| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3767664 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (69/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3767694 | NA (NA) | noncoding (99/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 626 total aligned reads displayed.
CTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGG > CP009273/3767598‑3767730 | cTGATGCGCTATGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAg < 1:23080015/67‑1 (MQ=255)cTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAg > 1:6545189/1‑67 (MQ=255)cTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAg > 1:21632081/1‑67 (MQ=255)cTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGg < 1:19067110‑M1/68‑2 (MQ=255) tGATGGGCTACGCTCATCAGGCGTACTGGATGCTTCAGCATTTGTTGAATTTGCACGTTCTTGTAGGc < 1:23239528/68‑1 (MQ=18) tGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgg < 1:14408240‑M1/68‑6 (MQ=255) tGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccg < 1:31035987‑M1/67‑5 (MQ=255) gcgcTACGCTTATCAGGCCTACAGGATGCATCACATTTTGTTGAATTTGCACGTTCTTGTAGgccgga > 1:9041734‑M1/1‑62 (MQ=255) gcgcTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgga > 1:969839‑M1/1‑62 (MQ=255) cgcTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccggat > 1:3779717‑M1/1‑61 (MQ=255) aCGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAgg < 1:20817674/68‑1 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgcg < 1:8451416/68‑1 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgcg < 1:30648882/68‑1 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:1167788/1‑67 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:6244705/1‑67 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:4711235/1‑67 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:27426987/1‑67 (MQ=255) ttATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCt < 1:2130053/68‑1 (MQ=255) ttATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCt > 1:26818473/1‑68 (MQ=255) ttATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCt > 1:28514083/1‑68 (MQ=255) tATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCtt > 1:9836273/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:15744813/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:3528965/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:4298703/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:26239477/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:20032018/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTACTTGTAGGCCGGATAAGGCGCTTAc > 1:21985245/1‑68 (MQ=255) cAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcg < 1:5850005/68‑1 (MQ=255) cAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:24154653/1‑67 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:1404987/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:803118/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:11170069/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:10654346/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCAAGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:8879960/1‑68 (MQ=255) ccTACAGGATGCATCACAAATTGTTGAATTTGCACGTTCTTGTAGGCCGGATAATGAGCTTAcgccgc > 1:13963916/1‑68 (MQ=25) cTACAGGATGCATCACACTTTGTTGAATTTGCACGTGCTTGTAGGCCGGATAAGGCGCTTACGCCGCA > 1:24566281‑M2/1‑68 (MQ=255) ttcagGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCAT > 1:28360059‑M2/3‑68 (MQ=255) tACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCAT > 1:31647106‑M2/1‑68 (MQ=255) tACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCAT > 1:1251518‑M2/1‑68 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:19881409‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:17458259‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:16393550‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:2962488‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:18560254‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:6835866‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:20392395‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:5564410‑M2/68‑1 (MQ=255) ggATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:19673587‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:27253066‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:7287154‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:27962136‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC > 1:27675576‑M2/1‑67 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC > 1:17176231‑M2/1‑67 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC > 1:11478153‑M2/1‑67 (MQ=255) gCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCt < 1:25434784/68‑1 (MQ=255) cATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCt > 1:1931962/1‑67 (MQ=255) tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAATGCGCTTACGCCGCATCCGGCGCTGc > 1:10254143/1‑67 (MQ=255) tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc < 1:23936843/68‑1 (MQ=255) tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc < 1:7922302/68‑1 (MQ=255) tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGc > 1:302318/1‑67 (MQ=255) tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGc > 1:3004641/1‑67 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc > 1:18724548/1‑66 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc > 1:10907255/1‑66 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc > 1:7557516/1‑66 (MQ=255) caATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCct < 1:24728700/68‑1 (MQ=255) caATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCct < 1:13621464/68‑1 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc > 1:9375798/1‑66 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc > 1:14615308/1‑66 (MQ=255) aaTTTGATGAATTTGCACGTTTTTGTACGCCGTATATGGCGCTTACGCCGCATCGGGCGCTGCCCctc < 1:4502271/68‑1 (MQ=18) aTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctct < 1:12716049/68‑1 (MQ=255) tttGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCtctc < 1:1492713/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGTATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:31902653/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:10005215/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:16828458/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:2235081/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:25961813/68‑1 (MQ=255) gttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcctc > 1:1211919/1‑68 (MQ=255) tgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCa < 1:13166983/67‑1 (MQ=255) gAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACg < 1:22563884/68‑1 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGga < 1:1949187/68‑1 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGga < 1:26594938/68‑1 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGga < 1:18292254/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:29760356/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:29341558/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:17864087/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:2497558/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:25056316/68‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGGGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:12284367/68‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAggg < 1:15163051/67‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:31505611/68‑1 (MQ=255) cTTGTAGGCCGGATAAGGCGCTTTCGCCGCATCCGGCGCTGCCCCTCTCCTCCCGGAGAGGGTTTggg < 1:3890055/68‑1 (MQ=25) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:7730050/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:20278192/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:10497393/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:23432811/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:28945566/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:5119810/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:16227640/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg < 1:15328069/68‑1 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:5679312/1‑68 (MQ=255) | CTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGG > CP009273/3767598‑3767730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |