| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3767664 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (69/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3767694 | NA (NA) | noncoding (99/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 641 total aligned reads displayed.
GATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAA > CP009273/3767627‑3767761 | aggcaTCACACTTTGTGGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC > 1:5066610‑M2/3‑67 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:15508848‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:27051933‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC > 1:22487485‑M2/1‑67 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC > 1:27675576‑M2/1‑67 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:27962136‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:28828293‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:6095555‑M2/67‑1 (MQ=255) tGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCct > 1:28990900‑M2/1‑66 (MQ=255) tGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:14888636‑M2/66‑1 (MQ=255) ccATCACAATTTGTTTAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCt < 1:1535918/67‑1 (MQ=255) aTCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCAACCGGCGCTGc < 1:3707701/68‑1 (MQ=255) tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc < 1:23936843/68‑1 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc < 1:25014791/68‑1 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc < 1:29703507/68‑1 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc > 1:6447696/1‑66 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc > 1:7058236/1‑66 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc > 1:14547517/1‑66 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctc < 1:24646721/68‑1 (MQ=255) aaTTTGATGAATTTGCACGTTTTTGTACGCCGTATATGGCGCTTACGCCGCATCGGGCGCTGCCCctc < 1:4502271/68‑1 (MQ=18) aTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctc > 1:31527222/1‑67 (MQ=255) tttGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCtctc < 1:10466215/68‑1 (MQ=255) ttgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcc < 1:11517257/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:10005215/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:7778210/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:16828458/68‑1 (MQ=255) gAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACg > 1:28093555/1‑68 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACgg < 1:14048865/67‑1 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGga < 1:11975339/68‑1 (MQ=255) gCACGTTCTTGTAGGCGGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:17342912/68‑1 (MQ=255) gCACGTTCTTGTAGGCGGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:1284172/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:3026074/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:21889038/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:29341558/68‑1 (MQ=255) aCGTTCTTGTAGGCCGGTTAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:26179080/68‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAggg < 1:5411281/67‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:27305261/68‑1 (MQ=255) tCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGc < 1:22064913/43‑1 (MQ=255) tCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTgg < 1:23356448/68‑1 (MQ=255) tCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTgg < 1:7975546/68‑1 (MQ=255) cTTGTAGGCCGGATAAGGCGCTTTCGCCGCATCCGGCGCTGCCCCTCTCCTCCCGGAGAGGGTTTggg < 1:3890055/68‑1 (MQ=25) cTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTggg < 1:2994280/68‑1 (MQ=255) cTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTggg < 1:13061069/68‑1 (MQ=255) cTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTggg < 1:1946754/68‑1 (MQ=255) gTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGa > 1:21534411/1‑68 (MQ=255) gTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGa > 1:17752346/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGGGAGGGTTTGGGTGAgg > 1:23211169/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg < 1:15211876/68‑1 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:12590439/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:24238323/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:9190567/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:24793442/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:25405166/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:25957870/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCGCACGGAGAGGGTTTGGGTGAgg > 1:9768806/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGAGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:4180276/1‑68 (MQ=255) gCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGa > 1:7613233/1‑68 (MQ=255) gCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGa > 1:10612617/1‑68 (MQ=255) gCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGa > 1:3052759/1‑68 (MQ=255) gCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCGCCTCACGGAGAGGGTTTGGGTGAGGGa > 1:314077/1‑68 (MQ=255) ccGTATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAggg < 1:19755057/66‑1 (MQ=255) ccGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAggg < 1:18583955/66‑1 (MQ=255) cGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGaa < 1:20337606/67‑1 (MQ=255) ggATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGaaaa < 1:20681812/68‑1 (MQ=255) tAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGcc < 1:13936880/68‑1 (MQ=255) tAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGcc < 1:4749575/68‑1 (MQ=255) tAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGc < 1:19629864/67‑1 (MQ=255) cgcTTAGCCCGCAGCCGGCGCTGCGCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAc < 1:5816213/67‑1 (MQ=38) cgcTTACGCCGCTTCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGACAAGCCGCAc > 1:18911662/1‑67 (MQ=255) cgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAc < 1:1232599/67‑1 (MQ=255) cgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAc < 1:8854693/67‑1 (MQ=255) cgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAc < 1:20447788/67‑1 (MQ=255) cgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAc > 1:16278837/1‑67 (MQ=255) gcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAcc < 1:18291440/67‑1 (MQ=255) gcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAcc < 1:26642848/67‑1 (MQ=255) gcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAcc < 1:733489/67‑1 (MQ=255) gcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAcc < 1:11179185/67‑1 (MQ=255) gcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAcc < 1:13450944/67‑1 (MQ=255) gcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAcc < 1:23579962/67‑1 (MQ=255) gcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAcc < 1:32096121/67‑1 (MQ=255) gcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAcc < 1:22836982/67‑1 (MQ=255) aCGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGc < 1:9469858/68‑1 (MQ=255) gccgcATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGccc < 1:28426204/68‑1 (MQ=255) gccgcATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGc > 1:26431216/1‑66 (MQ=255) gccgcATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCGCACCCCAGccg > 1:866005/1‑67 (MQ=255) cgcATCCGGCGCTGCCCATCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCct < 1:19246387/67‑1 (MQ=255) tCCGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgc > 1:10870828‑M2/1‑6 (MQ=255) tCCGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgc > 1:21164857‑M2/1‑6 (MQ=255) tCCGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgc > 1:20080465‑M2/1‑6 (MQ=255) tCCGGCctacaagaacgtgcaaattcaacaaaatgtgatgcatcctgtaggcctgataagcgtagcgc > 1:9041734‑M2/1‑6 (MQ=255) ccGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgca < 1:10205959‑M2/68‑64 (MQ=255) ccGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCggg < 1:8297649/68‑1 (MQ=255) ccGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCggg < 1:150114/68‑1 (MQ=255) ccGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCggg < 1:16152296/68‑1 (MQ=255) ccGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCggg < 1:31783862/68‑1 (MQ=255) ccGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCggg < 1:30974857/68‑1 (MQ=255) ccGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCggg < 1:2787190/68‑1 (MQ=255) cGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgca < 1:66917‑M2/67‑64 (MQ=255) cGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgca < 1:17134098‑M2/67‑64 (MQ=255) ggCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcgtgataagcgtagcgcatc > 1:567169‑M2/1‑3 (MQ=255) | GATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAA > CP009273/3767627‑3767761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |