| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3849631 | 289 (0.750) | 16 (0.050) | 10/96 | NT | 5.3% | coding (37/348 nt) | yidH | DUF202 family inner membrane protein |
| ? | CP009273 | = 3849640 | 322 (0.980) | coding (28/348 nt) | yidH | DUF202 family inner membrane protein | |||||
Only 100 of 508 total aligned reads displayed.
GCCGCCAGAAATCCTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCT > CP009273/3849564‑3849696 | cgccAGAAATCCTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGt < 1:6870260/68‑1 (MQ=255) cAGAAATCCTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAAt < 1:30470027/68‑1 (MQ=255) aTCCTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGc > 1:26741723‑M2/1‑67 (MQ=255) cTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgct > 1:30292917‑M2/1‑64 (MQ=255) cTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgct > 1:28842722‑M2/1‑64 (MQ=255) cTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgct > 1:3843984‑M2/1‑64 (MQ=255) cTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgct > 1:27499227‑M2/1‑64 (MQ=255) aGTGCAGTACGTATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttc > 1:14583984‑M2/1‑62 (MQ=255) aGTGCAGTACGGATCCACGCCAGAATAGTACGCTGATTAGCCAGCGAGAAGCGGTATTCAGGcgcttc > 1:1479066‑M2/1‑62 (MQ=255) aGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttc > 1:31482783‑M2/1‑62 (MQ=255) aGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttc > 1:27879081‑M2/1‑62 (MQ=255) aGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttc > 1:20925324‑M2/1‑62 (MQ=255) aGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttc > 1:616318‑M2/1‑62 (MQ=255) aGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgct < 1:18529467‑M2/66‑5 (MQ=255) tGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttct < 1:19440990‑M2/67‑8 (MQ=255) gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTcc > 1:6588066/1‑68 (MQ=255) gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTcc > 1:12208043/1‑68 (MQ=255) gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTcc > 1:20158389/1‑68 (MQ=255) gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTcc > 1:22601205/1‑68 (MQ=255) gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTcc > 1:17265807/1‑68 (MQ=255) gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTcc > 1:10611826/1‑68 (MQ=255) gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAAACACGcgcttctc < 1:18218760‑M2/67‑9 (MQ=255) gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGAGAGAAGCGGTAATCAGGCGCTTCTcc > 1:11060619/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttctcgctg > 1:2150157‑M2/1‑54 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:2655705/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:29546617/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:25540311/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:2328568/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:10365668/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:31145280/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:15924496/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:15662375/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:15504903/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:13664334/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:12715688/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:10741329/1‑68 (MQ=255) aCGGATCCACGCCAGAAAAGTACGCACATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc > 1:7636131/1‑68 (MQ=255) ggATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCgg > 1:16970748/1‑68 (MQ=255) gATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCggg > 1:26507166/1‑68 (MQ=255) tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGcctgattaccggttctcgggggctaatg > 1:27858703‑M1/1‑40 (MQ=255) tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGcctgattaccgcttctcgctggctaat > 1:23476439‑M1/1‑40 (MQ=255) tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGccggattaccgcttctcgctggcttatg > 1:29647752‑M1/1‑40 (MQ=255) tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGaa > 1:9049047/1‑68 (MQ=255) tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGaa > 1:8035681/1‑68 (MQ=255) tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGaa > 1:7180621/1‑68 (MQ=255) tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGaa > 1:8397813/1‑68 (MQ=255) tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGaa > 1:25361953/1‑68 (MQ=255) tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGaa > 1:22893765/1‑68 (MQ=255) tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGaa > 1:12076307/1‑68 (MQ=255) cGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAAttt < 1:24119984/68‑1 (MQ=255) gCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAAttt > 1:5707120/1‑67 (MQ=255) cAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTc < 1:19033583/67‑1 (MQ=255) aaaGTACGCTCATTAGCCAGCGAGAAGCGcctgattaccgcttctcgctggctaatgagcgtacttt > 1:28248800‑M1/1‑29 (MQ=255) aaaGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCAttgt > 1:29221283/1‑68 (MQ=255) aaaGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCAttg < 1:22277217/67‑1 (MQ=255) aaaGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCGTCTCCGAGGCGGGAAATTTTCAttgt > 1:13951005/1‑68 (MQ=255) aGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCAttgtt > 1:92483/1‑67 (MQ=255) aGTACGCTCATTAGACAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCAttgtt > 1:21083413/1‑67 (MQ=255) tACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGc > 1:20563328/1‑67 (MQ=255) aCGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCt < 1:11840870/67‑1 (MQ=255) aCGCTCATTACCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCt < 1:6076385/67‑1 (MQ=255) cGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTcc < 1:19791422/68‑1 (MQ=255) cGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTcc < 1:19305698/68‑1 (MQ=255) cGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTcc < 1:16445430/68‑1 (MQ=255) cGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTcc < 1:27144121/68‑1 (MQ=255) cGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTcc < 1:25111828/68‑1 (MQ=255) gCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCt > 1:508978/1‑68 (MQ=255) aTTCGCCAGCGACAAGCGGTAATCAGGcgcttctcgctggctaatgagcgtacttttctggcgtgga > 1:21234549‑M2/1‑27 (MQ=255) ttAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCa < 1:21378118/68‑1 (MQ=255) gCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAAtt > 1:1000901/1‑68 (MQ=255) gCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAAtt > 1:23692387/1‑68 (MQ=255) gCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAAtt > 1:17056729/1‑68 (MQ=255) gCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAAtt > 1:32107200/1‑68 (MQ=255) cAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTc > 1:13094303/1‑68 (MQ=255) cAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTc > 1:5360619/1‑68 (MQ=255) cAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTc > 1:23906082/1‑68 (MQ=255) cAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTc > 1:27346718/1‑68 (MQ=255) gagaAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCa < 1:31356653/65‑1 (MQ=255) gagaAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCa < 1:20257855/65‑1 (MQ=255) gagaAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACt < 1:17629036/67‑1 (MQ=255) gagaAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTa > 1:11479860/1‑68 (MQ=255) aGCGcctgattcccgcttctcgctggctaatgagcgtacttttctggcgtggatccgtactgcactag < 1:21822856‑M1/68‑65 (MQ=255) aGCGcctgattaccgcttctcgctggctaatgagcgtacttttctggcgtggatccgtactgcactag < 1:8543265‑M1/68‑65 (MQ=255) aGCGcctgattaccgcttctcgctggctaatgagcgtacttttctggcgtggatccgtactgcactag > 1:3533708‑M1/1‑4 (MQ=255) aGCGcctgattaccgcttctcgctggctaatgagcgtacttttctggcgtggatccgtactgcactag > 1:14996271‑M1/1‑4 (MQ=255) aGCGcctgattaccgcttctcgctggctaatgagcgtacttttctggcgtggatccgtactgcactag > 1:13426882‑M1/1‑4 (MQ=255) aGCGcctgattaccgcttctcgctggctaatgagcgtacttttctggcgtggatccgtactgcacta < 1:31698095‑M1/67‑64 (MQ=255) aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCGTTTGCAATTTCACTAACg < 1:4855814/67‑1 (MQ=255) aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAAc < 1:4662182/66‑1 (MQ=255) aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACg < 1:19563763/67‑1 (MQ=255) aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACg < 1:26046009/67‑1 (MQ=255) aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACg < 1:8741570/67‑1 (MQ=255) aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACg < 1:6441174/67‑1 (MQ=255) aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACg < 1:29933300/67‑1 (MQ=255) aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGc < 1:9705050/68‑1 (MQ=255) aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGc < 1:31954519/68‑1 (MQ=255) aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGc < 1:25965955/68‑1 (MQ=255) aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGc < 1:24601970/68‑1 (MQ=255) gcgcctgattaccgcttctcgctggctaatgagcgtacttttctggcgtggatccgtactgcactagg > 1:26412802‑M1/1‑3 (MQ=255) gCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGc > 1:23420279/1‑67 (MQ=255) | GCCGCCAGAAATCCTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCT > CP009273/3849564‑3849696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |