New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3849631289 (0.750)16 (0.050) 10/96 NT 5.3% coding (37/348 nt) yidH DUF202 family inner membrane protein
?CP009273 = 3849640 322 (0.980)coding (28/348 nt) yidH DUF202 family inner membrane protein

Only 100 of 458 total aligned reads displayed.

ATCCTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCTCTACCTTTAG  >  CP009273/3849574‑3849706
                                                                  |                                                                  
aTCCTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGc                                                                   >  1:26741723‑M2/1‑67 (MQ=255)
   cTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgct                                                                >  1:23477847‑M2/1‑64 (MQ=255)
   cTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgct                                                                >  1:14996271‑M2/1‑64 (MQ=255)
   cTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgct                                                                >  1:3533708‑M2/1‑64 (MQ=255)
   cTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgct                                                                >  1:31304264‑M2/1‑64 (MQ=255)
   cTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgct                                                                >  1:27499227‑M2/1‑64 (MQ=255)
   cTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgct                                                                >  1:13383711‑M2/1‑64 (MQ=255)
   cTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGGAATCAGGcgct                                                                <  1:21822856‑M2/68‑5 (MQ=255)
    tAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgctt                                                               >  1:31933223‑M2/1‑63 (MQ=255)
    tAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgct                                                                <  1:6631543‑M2/67‑5 (MQ=255)
     aGTGCAGTACGTATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttc                                                              >  1:14583984‑M2/1‑62 (MQ=255)
     aGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttc                                                              >  1:616318‑M2/1‑62 (MQ=255)
     aGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttc                                                              >  1:21048600‑M2/1‑62 (MQ=255)
      gTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttc                                                              <  1:20589311‑M2/67‑7 (MQ=255)
       tGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttct                                                             <  1:19842299‑M2/67‑8 (MQ=255)
       tGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttct                                                             <  1:19440990‑M2/67‑8 (MQ=255)
        gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttct                                                             >  1:12106420‑M2/1‑59 (MQ=255)
        gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTcc                                                           >  1:31603982/1‑68 (MQ=255)
        gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTcc                                                           >  1:32077842/1‑68 (MQ=255)
        gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTcc                                                           >  1:20158446/1‑68 (MQ=255)
        gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTcc                                                           >  1:18800024/1‑68 (MQ=255)
        gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTcc                                                           >  1:853290/1‑68 (MQ=255)
        gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTcc                                                           >  1:10890682/1‑68 (MQ=255)
        gCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAAACACGcgcttctc                                                            <  1:18218760‑M2/67‑9 (MQ=255)
             aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc                                                      >  1:10153115/1‑68 (MQ=255)
             aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc                                                      >  1:2955263/1‑68 (MQ=255)
             aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc                                                      >  1:22613114/1‑68 (MQ=255)
             aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc                                                      >  1:2328568/1‑68 (MQ=255)
             aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc                                                      >  1:4887251/1‑68 (MQ=255)
             aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc                                                      >  1:11672164/1‑68 (MQ=255)
             aCGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc                                                      >  1:12360961/1‑68 (MQ=255)
             aCGGATCCAAGCCAGAAAAGTAAGCTCATTAGCCAGAGAGAAGCGGTAATCAGGCGCTTCTCCGAGGc                                                      >  1:25363097/1‑68 (MQ=255)
                gATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCggg                                                   >  1:25130080/1‑68 (MQ=255)
                gATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCggg                                                   >  1:26507166/1‑68 (MQ=255)
                gATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCggg                                                   >  1:7875480/1‑68 (MQ=255)
                  tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGGGGCGGGaa                                                 >  1:10652741/1‑68 (MQ=255)
                  tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGaa                                                 >  1:26550991/1‑68 (MQ=255)
                  tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGaa                                                 >  1:16389973/1‑68 (MQ=255)
                  tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGaa                                                 >  1:5932532/1‑68 (MQ=255)
                  tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGaa                                                 >  1:15763705/1‑68 (MQ=255)
                  tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGaa                                                 >  1:9049047/1‑68 (MQ=255)
                  tCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGAAATCAGGCGCTTCTCCGAGGCGGGaa                                                 >  1:30390889/1‑68 (MQ=255)
                  tCCACGCCAGAAAAGTACGCTCATTAGCCAGCCAGAAGCCGTAATCAGGCGCTTATCCGAGCCGGCaa                                                 >  1:1280831/1‑68 (MQ=255)
                  tCCACGACAGAAAAGTACGCTCAATAGCCAGCGAGAAGCGGTAATAAGGCGCTTCTCCGAGGCGGGaa                                                 >  1:6452033/1‑68 (MQ=255)
                     aCGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAAtt                                              <  1:15550683/68‑1 (MQ=255)
                      cGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAAttt                                             <  1:13779879/68‑1 (MQ=255)
                      cGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAAttt                                             <  1:26169535/68‑1 (MQ=255)
                       gCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAAttt                                             >  1:5707120/1‑67 (MQ=255)
                       gCCAGAAAAGTACCCTCATAAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAAttt                                             >  1:17048947/1‑67 (MQ=255)
                         cAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTc                                           <  1:19033583/67‑1 (MQ=255)
                             aaaGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGcgcttctcgctggctaatgagcgtact                                         >  1:24736194‑M2/1‑38 (MQ=255)
                             aaaGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCAttgt                                      >  1:17789979/1‑68 (MQ=255)
                             aaaGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCAttg                                       <  1:9759052/67‑1 (MQ=255)
                             aaaGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCAttg                                       <  1:4735524/67‑1 (MQ=255)
                             aaaGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCAttg                                       <  1:17250777/67‑1 (MQ=255)
                             aaaGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCAttg                                       <  1:16506940/67‑1 (MQ=255)
                             aaaGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCAtt                                        <  1:30741461/66‑1 (MQ=255)
                               aGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCAttgtt                                     >  1:92483/1‑67 (MQ=255)
                               aGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCAttgtt                                     >  1:2887585/1‑67 (MQ=255)
                                 tACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGc                                   >  1:24100491/1‑67 (MQ=255)
                                  aCGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCt                                  <  1:23828476/67‑1 (MQ=255)
                                  aCGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCt                                  <  1:21520787/67‑1 (MQ=255)
                                   cGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTcc                                <  1:19305698/68‑1 (MQ=255)
                                   cGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTcc                                <  1:27144121/68‑1 (MQ=255)
                                    gCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCt                               >  1:508978/1‑68 (MQ=255)
                                      tCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCttt                             >  1:30113722/1‑68 (MQ=255)
                                       cATTAGCCCCCGAGAACCGGTAATCAGGcgcttctcgctggctaatgagcgtacttttctggcgtgga                            >  1:27858703‑M2/1‑28 (MQ=255)
                                        aTTCGCCAGCGACAAGCGGTAATCAGGcgcttctcgctggctaatgagcgtacttttctggcgtgga                            >  1:21234549‑M2/1‑27 (MQ=255)
                                         ttAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCa                          <  1:28117204/68‑1 (MQ=255)
                                         ttAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCa                          <  1:2027542/68‑1 (MQ=255)
                                         ttAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCa                          <  1:21378118/68‑1 (MQ=255)
                                           aGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAAt                        >  1:31460066/1‑68 (MQ=255)
                                            gCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAAtt                       >  1:1000901/1‑68 (MQ=255)
                                              cAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAAtt                       <  1:28289435/66‑1 (MQ=255)
                                              cAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAAtt                       <  1:27365760/66‑1 (MQ=255)
                                              cAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTc                     >  1:5360619/1‑68 (MQ=255)
                                              cAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTc                     >  1:11378361/1‑68 (MQ=255)
                                              cAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCATTTGCAATTTc                     >  1:14919183/1‑68 (MQ=255)
                                                  gagaAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCa                    <  1:8345588/65‑1 (MQ=255)
                                                  gagaAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTa                 >  1:19621124/1‑68 (MQ=255)
                                                  gagaAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTa                 >  1:25967834/1‑68 (MQ=255)
                                                      aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACg              <  1:10608188/67‑1 (MQ=255)
                                                      aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACg              <  1:29274867/67‑1 (MQ=255)
                                                      aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACg              <  1:7584746/67‑1 (MQ=255)
                                                      aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACg              <  1:13619211/67‑1 (MQ=255)
                                                      aGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGc             <  1:22323648/68‑1 (MQ=255)
                                                       gCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGc             >  1:23420279/1‑67 (MQ=255)
                                                         ggTAATCAGGcgcttctcgctggctaatgagcgtacttttctggcgtggatccgtactgcactagga           >  1:3402225‑M2/1‑10 (MQ=255)
                                                           tAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCTCTa         <  1:29659773/67‑1 (MQ=255)
                                                            aaTCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCTCTAcc       <  1:714048/68‑1 (MQ=255)
                                                             aTCAGGCGCTTCTCCGAGGCGGGATATTTTCATTGTTGCTCCTTTGGAATTTCAATAACGCTATACCt      <  1:6933505/68‑1 (MQ=255)
                                                             aTCAGGCGCTTCCCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCTCTACCt      <  1:23055264/68‑1 (MQ=255)
                                                              tCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCTCTACCtt     >  1:25749697/1‑68 (MQ=255)
                                                                 ggCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCTCTACCTTTa   >  1:4259317/1‑67 (MQ=255)
                                                                 ggCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCTCTACCTTTa   >  1:11935269/1‑67 (MQ=255)
                                                                 ggCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCTCTACCTTTa   >  1:15977600/1‑67 (MQ=255)
                                                                 ggCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCTCTACCTTTa   >  1:866109/1‑67 (MQ=255)
                                                                 ggCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCTCTACCTTTa   >  1:24326393/1‑67 (MQ=255)
                                                                 ggCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCTCTACCTTTa   >  1:1733975/1‑67 (MQ=255)
                                                                 ggCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAACTTCACTAACGCTCTACCTTTa   >  1:14177482/1‑67 (MQ=255)
                                                                  |                                                                  
ATCCTAGTGCAGTACGGATCCACGCCAGAAAAGTACGCTCATTAGCCAGCGAGAAGCGGTAATCAGGCGCTTCTCCGAGGCGGGAAATTTTCATTGTTGCTCCTTTGCAATTTCACTAACGCTCTACCTTTAG  >  CP009273/3849574‑3849706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.