New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 372791 =NA (NA)4 (0.010) 3/98 NT NA noncoding (1/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
?CP009273 372824 = NA (NA)noncoding (34/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 545 total aligned reads displayed.

TGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATG  >  CP009273/372757‑372891
                                                                   |                                                                   
   tgtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTAc                                                                  >  1:1034021/1‑68 (MQ=255)
   tgtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTAc                                                                  >  1:21744135/1‑68 (MQ=255)
   tgtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTAc                                                                  >  1:20787463/1‑68 (MQ=255)
   tgtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTAc                                                                  >  1:18245700/1‑68 (MQ=255)
    gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACg                                                                 <  1:5519407/68‑1 (MQ=255)
    gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACg                                                                 >  1:23953875/1‑68 (MQ=255)
      ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGt                                                               <  1:24409399/68‑1 (MQ=255)
      ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGt                                                               <  1:7360075/68‑1 (MQ=255)
      ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGt                                                               <  1:6706581/68‑1 (MQ=255)
        tAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGttt                                                             >  1:5059393/1‑68 (MQ=255)
         aaaCATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTa                                                            >  1:20985822/1‑68 (MQ=255)
           aCATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATg                                                          >  1:11750564/1‑68 (MQ=255)
           aCATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATg                                                          >  1:23670811/1‑68 (MQ=255)
             aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATggg                                                        <  1:22248720/68‑1 (MQ=255)
             aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATgg                                                         >  1:28545878/1‑67 (MQ=255)
             aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATgg                                                         >  1:21145030/1‑67 (MQ=255)
             aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATgg                                                         >  1:19937782/1‑67 (MQ=255)
             aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATgg                                                         >  1:10045108/1‑67 (MQ=255)
             aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATgg                                                         >  1:26214862/1‑67 (MQ=255)
             aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATgg                                                         >  1:12125825/1‑67 (MQ=255)
             aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATgg                                                         >  1:27000974/1‑67 (MQ=255)
             aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATgg                                                         >  1:8932559/1‑67 (MQ=255)
             aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATgg                                                         >  1:15569304/1‑67 (MQ=255)
             aTAGATAAGTAGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCAACGGTATATgg                                                         >  1:31093188/1‑67 (MQ=21)
             aTAGATAAGACGTGCGGCGATGCCTGATGCGACCCTATGCGCGTCTTATCACGCCTACGGTTTATggg                                                        >  1:27201607/1‑68 (MQ=18)
               aGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGt                                                               <  1:31440410/59‑1 (MQ=255)
                  taggTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAg                                                   >  1:532052/4‑68 (MQ=255)
                  tAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAg                                                   >  1:10471246/1‑68 (MQ=255)
                  tAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAg                                                   >  1:31579939/1‑68 (MQ=255)
                  tAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAg                                                   >  1:6017364/1‑68 (MQ=255)
                  tAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAg                                                   >  1:19766559/1‑68 (MQ=255)
                   aaGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgt                                                  <  1:3827420/68‑1 (MQ=255)
                   aaGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgt                                                  <  1:827325/68‑1 (MQ=255)
                   aaGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgt                                                  >  1:10668726/1‑68 (MQ=255)
                   aaGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgt                                                  <  1:23068182/68‑1 (MQ=255)
                   aaGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgt                                                  <  1:25650469/68‑1 (MQ=255)
                   aaGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgt                                                  >  1:9468660/1‑68 (MQ=255)
                   aaGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgt                                                  <  1:29980702/68‑1 (MQ=255)
                   aaGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgt                                                  <  1:30626763/68‑1 (MQ=255)
                   aaGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgt                                                  <  1:15014141/68‑1 (MQ=255)
                     gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                >  1:8651876/1‑68 (MQ=255)
                     gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                >  1:27765081/1‑68 (MQ=255)
                     gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                >  1:28241610/1‑68 (MQ=255)
                     gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                >  1:29806062/1‑68 (MQ=255)
                     gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                >  1:31186709/1‑68 (MQ=255)
                     gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                >  1:31350314/1‑68 (MQ=255)
                     gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                >  1:19445480/1‑68 (MQ=255)
                     gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                >  1:22135157/1‑68 (MQ=255)
                     gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                >  1:21834453/1‑68 (MQ=255)
                      tCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGa                                                     <  1:31721826/62‑1 (MQ=255)
                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                <  1:17819077/66‑1 (MQ=255)
                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAg                                              >  1:3503114/1‑68 (MQ=255)
                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAg                                              >  1:15202480/1‑68 (MQ=255)
                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAg                                              <  1:14718621/68‑1 (MQ=255)
                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAg                                              >  1:6351648/1‑68 (MQ=255)
                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAg                                              >  1:30152240/1‑68 (MQ=255)
                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAg                                              <  1:20640209/68‑1 (MQ=255)
                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAg                                              >  1:26600195/1‑68 (MQ=255)
                            gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCgg                                         >  1:12499656/1‑68 (MQ=255)
                            gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCgg                                         <  1:8008208/68‑1 (MQ=255)
                            gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCgg                                         >  1:4147072/1‑68 (MQ=255)
                            gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCgg                                         <  1:16716827/68‑1 (MQ=255)
                            gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCgg                                         >  1:16101633/1‑68 (MQ=255)
                            gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCg                                          <  1:14294744/67‑1 (MQ=255)
                            gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCg                                          <  1:12075029/67‑1 (MQ=255)
                            gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCg                                          <  1:19257537/67‑1 (MQ=255)
                            gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCg                                          <  1:15716826/67‑1 (MQ=255)
                              aGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGa                                        <  1:18733519/67‑1 (MQ=255)
                                  GCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAgg                                   >  1:19043508‑M1/1‑68 (MQ=255)
                                        TGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTc                              <  1:7756721‑M1/67‑1 (MQ=255)
                                        TGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTc                              <  1:13291236‑M1/67‑1 (MQ=255)
                                        TGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTc                              <  1:6931986‑M1/67‑1 (MQ=255)
                                        TGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTc                              <  1:20209429‑M1/67‑1 (MQ=255)
                                         gCGACGCTATGCGCGTCTTATCAGGCTTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAc                            >  1:28036376/1‑68 (MQ=255)
                                              gCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgccgc                       >  1:12913826/1‑68 (MQ=255)
                                              gCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgccgc                       >  1:5821278/1‑68 (MQ=255)
                                              gCTATGCGCGTCTTATCAGGCCTAAGGTTTATGGGCGAAGTGTAGAACGGATAAGGCGTTCAcgccgc                       >  1:25363218/1‑68 (MQ=17)
                                              gCTATGCGCGTCTTAACAGGCCTACGGTTTATGGGCGAAGTGTAGGCCGGATAAGGCGTTCAcgccgc                       >  1:7035702/1‑68 (MQ=14)
                                                tATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCa                      >  1:935648/1‑67 (MQ=255)
                                                 aTGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATc                    <  1:29097760/68‑1 (MQ=255)
                                                 aTGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATc                    <  1:1364624/68‑1 (MQ=255)
                                                   gcgcGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCg                  >  1:17404195/1‑68 (MQ=255)
                                                     gcgTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCgg                 <  1:12816670/67‑1 (MQ=255)
                                                     gcgTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc                >  1:29513534/1‑68 (MQ=255)
                                                     gcgTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc                >  1:28842534/1‑68 (MQ=255)
                                                     gcgTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc                >  1:10847560/1‑68 (MQ=255)
                                                      cgTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCa               >  1:30796111/1‑68 (MQ=255)
                                                        tCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAg              >  1:23452432/1‑67 (MQ=255)
                                                        tCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAg              >  1:7228712/1‑67 (MQ=255)
                                                        tCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAg              >  1:2483027/1‑67 (MQ=255)
                                                        tCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCCCATCCGGCAg              >  1:18469340/1‑67 (MQ=255)
                                                         cTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGt             <  1:14006492/67‑1 (MQ=255)
                                                         cTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGt             <  1:22656910/67‑1 (MQ=255)
                                                          ttATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCg           <  1:27693107/68‑1 (MQ=255)
                                                              caggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTgcg       <  1:11303290‑M2/63‑1 (MQ=255)
                                                              caggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTgcg       <  1:27953996‑M2/63‑1 (MQ=255)
                                                                 gcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCa    >  1:4797089‑M2/3‑68 (MQ=255)
                                                                 gcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCa    >  1:22888817‑M2/3‑68 (MQ=255)
                                                                  cCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCAt   >  1:17598274‑M2/2‑68 (MQ=255)
                                                                   cTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATg  <  1:14554331/68‑1 (MQ=255)
                                                                   |                                                                   
TGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATG  >  CP009273/372757‑372891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.