New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1238033 =523 (1.360)25 (0.100) 15/76 NT 7.9% coding (504/915 nt) ldcA murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A
?CP009273 1238051 = 228 (0.870)coding (486/915 nt) ldcA murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A

Only 100 of 600 total aligned reads displayed.

CGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGG  >  CP009273/1237984‑1238118
                                                                   |                                                                   
 gATCAGTGAAATCCGCATCGCAAGATTGCCTCCCCCCAACGTGCCATCGGCCCGTCAGGTCGGGCCt                                                                     >  1:4122888/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGCCATGTCGGGCCt                                                                     >  1:19639301/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGCCATGTCGGGCCt                                                                     >  1:27621237/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:13597826/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:20289975/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:22646545/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:23108491/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:23407377/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:1539152/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:2385670/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:24608211/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:1437688/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:1409876/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:28555073/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:30872923/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:31840617/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:4355838/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:12478810/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:4668059/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:11996251/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:4948577/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:794113/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:8286939/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:897995/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:9176924/1‑67 (MQ=255)
 gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                                     >  1:9483707/1‑67 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc                                                                  <  1:9678381/68‑1 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc                                                                  <  1:19814225/68‑1 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc                                                                  <  1:14813346/68‑1 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc                                                                  <  1:11259743/68‑1 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc                                                                   >  1:17647387/1‑67 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc                                                                   <  1:12904724/67‑1 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc                                                                   >  1:30635148/1‑67 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACAGGTCGGGCCTTc                                                                   >  1:5348719/1‑67 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACAGGTCGGGCCTTc                                                                   >  1:3217368/1‑67 (MQ=255)
   tCAGTGAAATCAGCATCGCAAGATTGCCACCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc                                                                   <  1:26217317/67‑1 (MQ=255)
     aGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTcc                                                                  >  1:6331745/1‑66 (MQ=255)
        gAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTccccgt                                                              >  1:25690931/1‑65 (MQ=255)
        gAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTg                                                             <  1:18360769/68‑1 (MQ=255)
         gttacgcaatgaaaccttcaccattgaatggcaaggggaaggcccgacatgtcgggccTTCCCCTTGc                                                            <  1:17091471‑M2/10‑1 (MQ=255)
           aTCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTAGGCCCGACATGTCGGGCCTTACCCTTGCCa                                                          >  1:26728994/1‑68 (MQ=255)
            tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt                                                         <  1:28736779/68‑1 (MQ=255)
            tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt                                                         <  1:10492569/68‑1 (MQ=255)
            acgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCAt                                                         >  1:25162951‑M1/38‑68 (MQ=255)
             cAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt                                                         >  1:18004109/1‑67 (MQ=255)
                 aTCGCAAGATTGCCTCCCCACAACGTGCCTTCGTCCCGACATGTCGGGCCTTCCCCTTGCCATTCAAt                                                    <  1:6463177/68‑1 (MQ=255)
                 aTCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAAt                                                    <  1:5054589/68‑1 (MQ=255)
                 aTCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAAt                                                    <  1:15011936/68‑1 (MQ=255)
                 aTCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAAt                                                    <  1:13348140/68‑1 (MQ=255)
                 aTCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAAt                                                    <  1:12093880/68‑1 (MQ=255)
                 aTCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAAt                                                    <  1:29531095/68‑1 (MQ=255)
                   cGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATgg                                                  <  1:12666452/68‑1 (MQ=255)
                   cGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATgg                                                  <  1:8608893/68‑1 (MQ=255)
                        cttcaccattgaatggcaaggggaaggcccgacatgtcgggccTTCCCCTTGGCATTCAATGGTGAAg                                             >  1:21367973‑M2/44‑68 (MQ=255)
                         aTTGCCTCCCCACAACGTGCCTTCGGCCCGCCATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAgg                                            >  1:5756423/1‑68 (MQ=255)
                         aTTGCCTCCCCACAACGTGCCTTCGGCCCGCCATGTCGGGCCTTCCCCTTGCCAGTCAATGGTGAAgg                                            >  1:31713865/1‑68 (MQ=255)
                         aTTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAgg                                            >  1:7741558/1‑68 (MQ=255)
                         aTTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAgg                                            >  1:14487343/1‑68 (MQ=255)
                         aTTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAgg                                            >  1:27007685/1‑68 (MQ=255)
                          ttGCCTCCCCACACCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAg                                             <  1:19182913/66‑1 (MQ=255)
                          ttGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAg                                             <  1:603534/66‑1 (MQ=255)
                          ttGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGt                                           <  1:28196235/68‑1 (MQ=255)
                          ttGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGt                                           <  1:21869902/68‑1 (MQ=255)
                          ttGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGt                                           <  1:22485800/68‑1 (MQ=255)
                            gCCTCCCCACAACGTGCCTTCGGCCCGACAAGTCGGGCCTTCCCCTTGCCATTAAATGGTGAAGGttt                                         >  1:19963920/1‑68 (MQ=255)
                             ccattgaatggcaaggggaaggcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTc                                        >  1:13882225‑M2/39‑68 (MQ=255)
                                  gactggcacggggacggcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGc                                   <  1:22010943‑M2/35‑1 (MQ=255)
                                  gaatgccacggggaaggcccgacatgtcgggccGTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGc                                   <  1:19309925‑M2/35‑1 (MQ=255)
                                  gaagggcacggggacGGCCCGACATGGCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGc                                   >  1:15982196‑M1/16‑68 (MQ=255)
                                  ccACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGc                                   >  1:20590176/1‑68 (MQ=255)
                                  ccACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGc                                   <  1:17478777/68‑1 (MQ=255)
                                   cacaACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCg                                  >  1:21149395/1‑68 (MQ=255)
                                    atggcaaggggaaGGCCCGACATGTCGGGCCATCCCCTGGCCATTTAATGGTGAAGGTTTCATTGCGt                                 <  1:25595736‑M1/55‑1 (MQ=255)
                                    acaACGTGCCTTCGGCCCGGCATGTCGGGCCTTCCCCTTGGCATTCAATGGTGAAGGTTTCATTGCGt                                 >  1:26486735/1‑68 (MQ=255)
                                    acaACGTGCCTTCGGCCCGACATGTGGGGCCTTCCCCTTGCCATTCAATCGTGAAGGGTTCATTGCGt                                 >  1:6996720/1‑68 (MQ=255)
                                    acaACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGt                                 >  1:24828621/1‑68 (MQ=255)
                                       aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc                              >  1:7426665/1‑68 (MQ=255)
                                       aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc                              >  1:29161175/1‑68 (MQ=255)
                                        cGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTACATTGCGTAAc                              >  1:18126621/1‑67 (MQ=255)
                                         gTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACg                             >  1:25903838/1‑67 (MQ=255)
                                            gggaaGGCCCGACATGTCGGGCCGTCCCCTTGCCAGTCAATGGTGAAGGTTTCATTGCGTATCgccag                         <  1:31256555‑M1/63‑1 (MQ=255)
                                             cTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag                         <  1:7056862/67‑1 (MQ=255)
                                              cacGGCCCGACATGGCGGGCCTCCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagc                        <  1:17807743/65‑1 (MQ=255)
                                               tCGGCCTGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagcca                      <  1:24477194/68‑1 (MQ=255)
                                               tCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagcca                      <  1:24148229/68‑1 (MQ=255)
                                                 GGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGa                    >  1:10281483‑M1/1‑68 (MQ=255)
                                                  GCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGaa                   <  1:11633767‑M1/68‑1 (MQ=255)
                                                   CCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGaaa                  <  1:10809297‑M1/68‑1 (MQ=255)
                                                         atgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGt              >  1:29831347‑M2/11‑66 (MQ=255)
                                                         ATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGt              <  1:30305301‑M1/66‑1 (MQ=255)
                                                             cgggccTTCCCCTTGCCATTCAATGGAGAAGCTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCgg        >  1:1634499‑M2/7‑68 (MQ=255)
                                                             CGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCg         >  1:3814293‑M1/1‑67 (MQ=255)
                                                             CGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCg         >  1:13171433‑M1/1‑67 (MQ=255)
                                                             CGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCg         >  1:1096814‑M1/1‑67 (MQ=255)
                                                              gggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGt       <  1:1870505‑M2/63‑1 (MQ=255)
                                                              GGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGt       >  1:20906722‑M1/1‑68 (MQ=255)
                                                                 ccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTaaa    >  1:17010758‑M2/3‑68 (MQ=255)
                                                                 ccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTaaa    >  1:18981551‑M2/3‑68 (MQ=255)
                                                                 CCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTaaa    <  1:6197870‑M1/68‑1 (MQ=255)
                                                                   ttCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAgg  <  1:10048904/68‑1 (MQ=255)
                                                                   |                                                                   
CGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGG  >  CP009273/1237984‑1238118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.