| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2747582 = | 310 (0.810) | 29 (0.090) | 6/94 | NT | 11.2% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 200 (0.620) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
Only 100 of 524 total aligned reads displayed.
CAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTCGC > CP009273/2747538‑2747673 | cAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt < 1:19380911/68‑1 (MQ=255) aaGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACt < 1:25963152/67‑1 (MQ=255) aGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGc < 1:29053811/68‑1 (MQ=255) aGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGc < 1:24281896/68‑1 (MQ=255) gccgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCt < 1:109343‑M2/7‑1 (MQ=255) gCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt > 1:5777395/1‑68 (MQ=255) cgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:4404035‑M2/8‑1 (MQ=255) cgttgaggtggcttatgcgctacctgagaagcagcacctgcagcgagtgacgctgcaggTACTGCtt < 1:13416191‑M2/8‑1 (MQ=255) cgttgagggggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:7955716‑M2/8‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:17178175/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:14907518/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:22166970/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:10015982/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:14383056/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:25002424/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:2630794/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:9925056/67‑1 (MQ=255) cACCGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:22026455/67‑1 (MQ=255) aCTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTtct < 1:20855599/68‑1 (MQ=255) ggCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAg > 1:18664412/1‑68 (MQ=255) ggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCTTCTCAGGt < 1:2104689‑M2/15‑1 (MQ=255) cgcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAgg < 1:17852635/67‑1 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:27793150/67‑1 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:11846070/67‑1 (MQ=255) gcgAATAGCTTCTTCAACAGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:416791/67‑1 (MQ=255) gAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgc < 1:397974/68‑1 (MQ=255) gAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgc < 1:23171399/68‑1 (MQ=255) cttatgcgctacctgagacgcagtacctgcagcgagggacgctgcaggTACTGCTTCTCAGGTAgcg < 1:3344939‑M2/19‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:30231382/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:31191699/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:9274368/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:5953529/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:6686791/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc > 1:7002453/1‑68 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:19840309/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:20512745/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:21611387/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcg < 1:3545370/67‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcg < 1:2069384/67‑1 (MQ=255) ttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCTTCGCAGGTAgcgc < 1:8818093‑M2/20‑1 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATa < 1:27325135/66‑1 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg < 1:789947/68‑1 (MQ=255) tcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg > 1:28207510/1‑67 (MQ=255) ttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGcc > 1:15602572/1‑67 (MQ=255) ttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGcc > 1:19097076/1‑67 (MQ=255) tcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCAc < 1:16856728/68‑1 (MQ=255) cAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCAcc < 1:20077712/68‑1 (MQ=255) aCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTtct > 1:25382904/1‑46 (MQ=255) ccGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCa > 1:2860953/1‑68 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:10612531‑M1/59‑1 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:16257325‑M1/59‑1 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:11459798‑M1/59‑1 (MQ=255) agcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCACCGGc < 1:21312860‑M1/61‑1 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCaa > 1:29359239/1‑68 (MQ=255) cctcctGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAt < 1:17667903/67‑1 (MQ=255) aCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAtttt < 1:14575929‑M1/67‑1 (MQ=255) CCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAtttt < 1:9547419‑M1/67‑1 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTAc > 1:9084328‑M1/1‑68 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTAc > 1:1735521‑M1/1‑68 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTAc > 1:3157450‑M1/1‑68 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTAc > 1:22727662‑M1/1‑68 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTAc > 1:19588746‑M1/1‑68 (MQ=255) GCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTa < 1:11298340‑M1/65‑1 (MQ=255) GCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTa < 1:12795041‑M1/65‑1 (MQ=255) GCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTa < 1:28019191‑M1/65‑1 (MQ=255) CAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:2572957‑M1/68‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:16943278‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:10292690‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:18340380‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:8529064‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:7451294‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:23453312‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:23869348‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:559640‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:1258952‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:28342067‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:30727251‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:30479966‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:13645246‑M1/67‑1 (MQ=255) GCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:24405932‑M1/68‑1 (MQ=255) GCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:16477088‑M1/68‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:15892721‑M1/67‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:29961019‑M1/67‑1 (MQ=255) CGTCACTCGCTGAAGGTACTGCTTCTCAGGTAGCGCATAAGCCCCCTCAACGGCAATTTTACCTGGc < 1:21542731‑M1/67‑1 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc > 1:14055163‑M1/1‑66 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:14745615‑M1/66‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:1379050/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:15300213/67‑1 (MQ=255) aCTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGt < 1:31971987/68‑1 (MQ=255) aCTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGt < 1:497447/68‑1 (MQ=255) cTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTa < 1:6155237/68‑1 (MQ=255) ctgcaggTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTaaa > 1:13198166‑M2/8‑66 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:22646998/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:7191474/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:29645147/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:26781652/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:484804/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:18108779/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:13887305/1‑67 (MQ=255) tACTCCTTCTCAGGTAGCGCATAACCCACCTCAACGGCAATTTTACCTGGCACAGTATACCTCTTTc > 1:12017204/1‑67 (MQ=255) | CAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTCGC > CP009273/2747538‑2747673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |