| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3000957 = | 263 (0.680) | 14 (0.050) | 7/80 | NT | 6.7% | coding (89/1197 nt) | ygeX | 2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
| ? | CP009273 | 3000973 = | 199 (0.720) | coding (105/1197 nt) | ygeX | 2,3‑diaminopropionate ammonia lyase, PLP‑dependent | |||||
Only 100 of 345 total aligned reads displayed.
ACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCTTTTT > CP009273/3000906‑3001039 | aTTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTccacc > 1:16506562/1‑68 (MQ=255) cagcgcacaaagcggtgttgggcgataaccagctattttctggtggAACTGGCGCGCCAGTTccacc > 1:30927655‑M1/47‑67 (MQ=255) tttCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGa < 1:11282020/68‑1 (MQ=255) tttCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGa < 1:24808256/68‑1 (MQ=255) tttCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGa < 1:20986113/68‑1 (MQ=255) ttCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGaa > 1:686087/1‑68 (MQ=255) gcacaaagcggtgttgggcgataaccagctattttctggtggAACTGGCGCGCCAGTTCCACCAGa > 1:1030162‑M1/43‑66 (MQ=255) gcacaaagcggtgttgggcgataaccagctattttctggtggAACTGGCGCGCCAGTTCCACCAGa > 1:28274643‑M1/43‑66 (MQ=255) gcacaaagcggtgttgggcgataaccagctattttctggtggAACTGGCGCGCCAGTTCCACCAGa > 1:18326394‑M1/43‑66 (MQ=255) gAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTgg < 1:14824258/68‑1 (MQ=255) gAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTgg < 1:21953507/68‑1 (MQ=255) ggtgttgggcgataaccagctattttctggtggaactggcgcgccagttCCACCAGAAAATAGCTgg < 1:5349556‑M2/18‑1 (MQ=255) aaCATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGtt < 1:32015953/68‑1 (MQ=255) aaCATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGt < 1:15392232/67‑1 (MQ=255) aaCATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGt < 1:25117786/67‑1 (MQ=255) aTCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATc < 1:26420947/68‑1 (MQ=255) aTCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATc > 1:15897405/1‑68 (MQ=255) aTCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATc < 1:9727527/68‑1 (MQ=255) cACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGc < 1:15609879/68‑1 (MQ=255) cACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGc < 1:28811753/68‑1 (MQ=255) cACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGc < 1:29253392/68‑1 (MQ=255) cACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGc < 1:29443431/68‑1 (MQ=255) cACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGc < 1:29804206/68‑1 (MQ=255) cACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGc < 1:18015271/68‑1 (MQ=255) cACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGc < 1:5648668/68‑1 (MQ=255) cACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGc < 1:4310123/68‑1 (MQ=255) cACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGc < 1:8950437/68‑1 (MQ=255) aCCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGcc < 1:12084103/68‑1 (MQ=255) aCCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGc > 1:8149926/1‑67 (MQ=255) aCCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGc > 1:2526106/1‑67 (MQ=255) aCCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGc > 1:5199159/1‑67 (MQ=255) aCCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGGTCCACCAGAAAATAGCTGGTTATCGc > 1:23640936/1‑67 (MQ=255) ccGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGccc < 1:20556355/68‑1 (MQ=255) cGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCa < 1:10953745/68‑1 (MQ=255) cGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCa < 1:10012260/68‑1 (MQ=255) cGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCa < 1:30677238/68‑1 (MQ=255) tctTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAac < 1:28529401/67‑1 (MQ=255) tctTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAac > 1:8818135/1‑67 (MQ=255) tctTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAac < 1:13149401/67‑1 (MQ=255) ctTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAacac < 1:30456527/68‑1 (MQ=255) tttCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACAcc > 1:9570474/1‑67 (MQ=255) tttCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACAcc > 1:27758742/1‑67 (MQ=255) tttCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCg < 1:17259355/68‑1 (MQ=255) ccagctattttctggtggAACTGGCGCGCCAGTTGCACCAGAAATTAGCTGGTTATCGAccaacccc < 1:27847355‑M1/49‑4 (MQ=255) ttCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGc < 1:4795282/68‑1 (MQ=255) ttCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGc < 1:4061190/68‑1 (MQ=255) ttCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGc < 1:18724628/68‑1 (MQ=255) ttCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGc < 1:6397605/68‑1 (MQ=255) tCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCt < 1:7072591/68‑1 (MQ=255) cGCAAAGCCAGGCGAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCtt < 1:7756315/68‑1 (MQ=255) cGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCtt < 1:12464990/68‑1 (MQ=255) cGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCtt < 1:4923346/68‑1 (MQ=255) cGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCtt < 1:26996529/68‑1 (MQ=255) cGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCtt < 1:19896901/68‑1 (MQ=255) cAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTtg > 1:11855323/1‑68 (MQ=255) aaaGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTtgt < 1:21485972/68‑1 (MQ=255) aaaGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTtgt < 1:14111343/68‑1 (MQ=255) aaaGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTtgt < 1:7604858/68‑1 (MQ=255) tttctggtggAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc < 1:7382534‑M1/58‑1 (MQ=255) aGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc < 1:30995356/68‑1 (MQ=255) aGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc < 1:15187005/68‑1 (MQ=255) aGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc < 1:1276587/68‑1 (MQ=255) aGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc < 1:24394298/68‑1 (MQ=255) gCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc > 1:2035235/1‑67 (MQ=255) gCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc > 1:26139056/1‑67 (MQ=255) gCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc > 1:6292318/1‑67 (MQ=255) tctggtggaactggcgcgccagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc > 1:19115751‑M2/25‑66 (MQ=255) tctggtggAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc < 1:27180700‑M1/58‑1 (MQ=255) tctggtggAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTgc < 1:5124‑M1/58‑1 (MQ=255) cAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCt < 1:14367472/68‑1 (MQ=255) cAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCt < 1:333914/68‑1 (MQ=255) cAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCt < 1:19523695/68‑1 (MQ=255) cAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCt < 1:10501341/68‑1 (MQ=255) cAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCt < 1:834759/68‑1 (MQ=255) cAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCt < 1:22514347/68‑1 (MQ=255) ggtggAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTgg < 1:3673778‑M1/63‑1 (MQ=255) ccAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTgg < 1:13959706/66‑1 (MQ=255) ccAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTgg < 1:21129603/66‑1 (MQ=255) ccAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTgg < 1:2634437/66‑1 (MQ=255) ccAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGAc > 1:10564439/1‑68 (MQ=255) aactggcgcgccagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGAt < 1:26705848‑M2/52‑1 (MQ=255) AACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGAt > 1:8382060‑M1/1‑68 (MQ=255) CTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGAtct > 1:26020138‑M1/1‑68 (MQ=255) CTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGAtc < 1:3758358‑M1/67‑1 (MQ=255) CTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGAtc < 1:19006437‑M1/67‑1 (MQ=255) tggcgcgccagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGAtctc > 1:22637956‑M2/14‑68 (MQ=255) GGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGCCGAgctc < 1:23947660‑M1/67‑1 (MQ=255) gcgccagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCaa > 1:6545220‑M2/10‑68 (MQ=255) GCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCaa < 1:19250460‑M1/68‑1 (MQ=255) gccagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCaaa > 1:28318661‑M2/8‑67 (MQ=255) gccagatCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAAc < 1:25652165‑M2/61‑1 (MQ=255) cagttCCACCAGAAAATAGCTGGTTATCGCCCATCACCGCTTTGTGCGCTGGACGATCTCGCAAAcc < 1:9045586‑M2/62‑1 (MQ=255) cagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAAcc < 1:10153539‑M2/62‑1 (MQ=255) cagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAAcc < 1:16172788‑M2/62‑1 (MQ=255) cagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAAcc < 1:20082450‑M2/62‑1 (MQ=255) cagttCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAAcc < 1:30368110‑M2/62‑1 (MQ=255) CAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAAcc > 1:1750020‑M1/1‑67 (MQ=255) CAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAAcc > 1:29633447‑M1/1‑67 (MQ=255) CAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAAcc > 1:15659280‑M1/1‑67 (MQ=255) tCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCtt < 1:22690345‑M2/64‑1 (MQ=255) | ACAAATTTTTCAACGGCGAAACATCACCGCTCTTTTCGCAAAGCCAGGCCAAACTGGCGCGCCAGTTCCACCAGAAAATAGCTGGTTATCGCCCAACACCGCTTTGTGCGCTGGACGATCTCGCAAACCTTTTT > CP009273/3000906‑3001039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |