| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3701790 = | 125 (0.320) | 9 (0.030) | 6/88 | NT | 10.8% | intergenic (‑725/+186) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701955 = | 50 (0.170) | intergenic (‑890/+21) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 135 total aligned reads displayed.
CTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAA > CP009273/3701923‑3702020 | tctatcaccgaccaaattcgaaaagcctgctcGTTGAGCCGGCTGTTCGAATTTGGTCGGGGATagag > 1:18986031‑M2/33‑68 (MQ=255) ctatcaccgaccaaattcgaaaagcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAgg < 1:3239977‑M2/37‑1 (MQ=255) ctatcacccaccaaatcccaaacgccggctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAgg < 1:10916692‑M2/37‑1 (MQ=255) caatcaccgaccaaattcgaaaagcctgctcGTTGACCAGGCTTTTCGAATTTGGTCGGTGATAGAgg < 1:2814946‑M2/37‑1 (MQ=255) gAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTc > 1:1266082/1‑68 (MQ=31) gAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTc > 1:28653794/1‑68 (MQ=31) gAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTc < 1:3100630/68‑1 (MQ=31) gAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTc > 1:30647540/1‑68 (MQ=31) caccgaccaaattcgaaaagcctgctcGTTGGGCCGGCTTTTCGAATTTGGTCGGTGATAGAGGATTc > 1:6861105‑M2/28‑68 (MQ=255) accgaccaaattcgaaaagcctgcgcGGTGCGCAGGCGTTTCGAATTTGGTCGGTGATAGAGGATTc > 1:23000735‑M2/27‑67 (MQ=255) accgaccaaattcgaaaagcctgcgcGGTGAGCAGGCGTTTCGAATTTGGTGGGTGATAGAGGATTCg > 1:31798721‑M2/27‑68 (MQ=255) aGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCg > 1:2394166/1‑68 (MQ=33) aGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCg > 1:24637575/1‑68 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGTTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:6873797/1‑68 (MQ=25) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:19646773/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:20478529/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:27039134/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:17731265/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:17935175/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:18104746/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:1892856/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:16391639/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:30431483/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:30906638/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:13900179/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:31279183/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:12002746/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:4435574/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:8141460/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:8710930/1‑68 (MQ=35) tGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGaa > 1:9590736/1‑67 (MQ=37) tGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGaa > 1:10738918/1‑67 (MQ=37) tGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAAc < 1:19513574/68‑1 (MQ=39) tGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCGTTTCGAATTTGGTCGGTGATAGAGGATTCGac > 1:12178815/1‑66 (MQ=255) gCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAAcc < 1:10231194/68‑1 (MQ=40) gCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAAcc < 1:7511623/68‑1 (MQ=40) gCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAAcc < 1:28925220/68‑1 (MQ=40) gCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAAcc < 1:11794271/68‑1 (MQ=40) accaaattcgaaaagcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGaa > 1:23921948‑M2/23‑66 (MQ=255) cAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCt < 1:17337949/68‑1 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCt < 1:17511277/67‑1 (MQ=255) gATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTcc > 1:8747528/1‑68 (MQ=255) aTGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCg > 1:28028307/1‑68 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTcc < 1:19518821/66‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTc < 1:9284982/65‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCg > 1:18821220/1‑67 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCg > 1:21356468/1‑67 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCg > 1:8464997/1‑67 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCg < 1:7307231/67‑1 (MQ=255) cAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAc > 1:14580514/1‑67 (MQ=255) cAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAc > 1:25801505/1‑67 (MQ=255) aaaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAcccc < 1:25287256/68‑1 (MQ=255) aaaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAcccc < 1:30684065/68‑1 (MQ=255) aaaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAcccc < 1:27613074/68‑1 (MQ=255) aaagcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt > 1:19770196‑M2/12‑67 (MQ=255) aaagcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt > 1:11187129‑M2/12‑67 (MQ=255) aaagcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt > 1:439537‑M2/12‑67 (MQ=255) aaagcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt > 1:30562551‑M2/12‑67 (MQ=255) aaagcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt > 1:5402224‑M2/12‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGACCCTCCGACCCCTTCg > 1:7986112‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:6238856‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:14569511‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:30886307‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:9355306‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:14662550‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:13582475‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:1079146‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:16412371‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:17336564‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:3949531‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:23071393‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:7809269‑M2/9‑67 (MQ=255) gcctgctcGTTGAGCAGGATTTTAGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTtct > 1:25678810‑M2/9‑66 (MQ=255) cctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATaga > 1:2349275‑M2/8‑42 (MQ=255) cctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt > 1:29043456‑M2/8‑67 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:864338‑M2/60‑1 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:11065850‑M2/60‑1 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:9925101‑M2/60‑1 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:24760776‑M2/60‑1 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:20833281‑M2/60‑1 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:21401219‑M2/60‑1 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:18738295‑M2/60‑1 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:18509148‑M2/60‑1 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:19003443‑M2/60‑1 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:13138223‑M2/60‑1 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:13461911‑M2/60‑1 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTc > 1:9104303‑M2/7‑67 (MQ=255) ctgctcGTTGAGCAGGCTTTTCGAACTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:20026566‑M2/60‑1 (MQ=255) gctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCg < 1:19968086‑M2/64‑1 (MQ=255) gctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCg < 1:24706926‑M2/64‑1 (MQ=255) gctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCg < 1:29836545‑M2/64‑1 (MQ=255) gctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCg < 1:4486354‑M2/64‑1 (MQ=255) gctcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCg > 1:2256921‑M2/5‑68 (MQ=255) gctcGTTGAGCAGGCTTTTCGAATTTGGGCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCg < 1:28153885‑M2/64‑1 (MQ=255) tcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGaa < 1:19267920‑M2/66‑1 (MQ=255) tcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGaa < 1:2259202‑M2/66‑1 (MQ=255) tcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGaa < 1:23434124‑M2/66‑1 (MQ=255) tcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGa < 1:2774636‑M2/65‑1 (MQ=255) tcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGa > 1:11391174‑M2/3‑67 (MQ=255) tcGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGa > 1:30693964‑M2/3‑67 (MQ=255) | CTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAA > CP009273/3701923‑3702020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |