| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3820789 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | intergenic (+138/+31) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter |
| ? | CP009273 | = 3820811 | NA (NA) | intergenic (+160/+9) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter | |||||
Only 100 of 533 total aligned reads displayed.
ATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATA > CP009273/3820744‑3820877 | tACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCt < 1:16037423/68‑1 (MQ=255) tACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCt > 1:314039/1‑68 (MQ=255) aCGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCt > 1:8535049/1‑67 (MQ=255) aCGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCt > 1:31699904/1‑67 (MQ=255) gCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCa < 1:25778628/68‑1 (MQ=255) gCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCa > 1:15806052/1‑68 (MQ=255) gCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCa > 1:1242733/1‑68 (MQ=255) cAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCa > 1:7171665/1‑67 (MQ=255) ggCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCg > 1:10022159/1‑68 (MQ=255) ggCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCg > 1:22334206/1‑68 (MQ=255) gCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCgg > 1:2376951/1‑68 (MQ=255) gCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCgg > 1:17008557/1‑68 (MQ=255) gCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCgg > 1:15698064/1‑68 (MQ=255) cTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATc < 1:6927539/65‑1 (MQ=255) cTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCg < 1:11778797/66‑1 (MQ=255) cTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGt > 1:28640784/1‑68 (MQ=255) tGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCg < 1:10631297/64‑1 (MQ=255) tAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAAcc > 1:2102109/1‑68 (MQ=255) tAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAAcc > 1:25153386/1‑68 (MQ=255) tAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAAcc > 1:18444310/1‑68 (MQ=255) tAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAAcc > 1:28267969/1‑68 (MQ=255) tAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAAcc > 1:24055819/1‑68 (MQ=255) aaagcgaagcgTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCTCACCTTCATCGGTTAAcc > 1:29595262/2‑68 (MQ=38) agcgaagcgTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCg > 1:7898442/1‑67 (MQ=255) agcgaagcgTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCg > 1:25552507/1‑67 (MQ=255) gcgTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCaaaaa > 1:9077447/1‑68 (MQ=255) gTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATc > 1:10817141/1‑68 (MQ=255) tCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGc > 1:24889745/1‑68 (MQ=255) tCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGc > 1:19143784/1‑68 (MQ=255) tCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGc > 1:16860517/1‑68 (MQ=255) aGGCATGTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCa > 1:23231203/1‑67 (MQ=255) gCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCaa > 1:3848986/1‑66 (MQ=255) gCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACa > 1:16552484/1‑68 (MQ=255) gCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACa > 1:30832631/1‑68 (MQ=255) cATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAAc < 1:26565373/66‑1 (MQ=255) cATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACa > 1:13121695/1‑67 (MQ=255) cATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACa > 1:30422851/1‑67 (MQ=255) cATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACa < 1:5192440/67‑1 (MQ=255) aTTTGTCTTTGTTGCGGCGTCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACAt < 1:3210897/67‑1 (MQ=255) aTTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACAt < 1:30280824/67‑1 (MQ=255) aTTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACAt < 1:5587196/67‑1 (MQ=255) aTTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACAt < 1:20230073/67‑1 (MQ=255) aTTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACAt < 1:24774836/67‑1 (MQ=255) aTTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACAt < 1:24564522/67‑1 (MQ=255) aTTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACAt < 1:12100683/67‑1 (MQ=255) aTTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACAt < 1:5388225/67‑1 (MQ=255) ttGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCaa < 1:9613948/68‑1 (MQ=255) gTCTTTGTTGCGGCGGCACTTCTACTGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAAt > 1:14809655/1‑68 (MQ=255) tttGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACa < 1:19834890/68‑1 (MQ=255) ttgttgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACaa < 1:27982834/68‑1 (MQ=255) ttgttgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACa > 1:16530212/1‑67 (MQ=255) tgttgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAAc < 1:4756965/68‑1 (MQ=255) tgttgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAAc < 1:21339358/68‑1 (MQ=255) tgttgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAAc < 1:13831464/68‑1 (MQ=255) gttgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACt < 1:24276006/68‑1 (MQ=255) gttgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACt > 1:17546094/1‑68 (MQ=255) ttgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACtt < 1:18831945/68‑1 (MQ=255) ttgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACtt > 1:27174317/1‑68 (MQ=255) tgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAGATCGGCAACATCAAATACAACtt < 1:14616944/67‑1 (MQ=255) tgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACtt < 1:2765698/67‑1 (MQ=255) tgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACtt < 1:3447511/67‑1 (MQ=255) tgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACtt < 1:15530126/67‑1 (MQ=255) tgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACtt < 1:12686005/67‑1 (MQ=255) tgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACtt < 1:23526705/67‑1 (MQ=255) tgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACtt < 1:7549883/67‑1 (MQ=255) tgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACtt < 1:25956479/67‑1 (MQ=255) tgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACtt < 1:11606302/67‑1 (MQ=255) tgCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGAAACATCAAATACAACtt < 1:19287368/67‑1 (MQ=255) tgCGGCGGCACTTCTACCGCCGCTTCATCGGATAACCGGCAAAAATCGGCAACATCAAATACAACtt < 1:17936017/67‑1 (MQ=255) ggcggcACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAAtt > 1:828410/1‑68 (MQ=255) ggcggcACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAAtt > 1:31259958/1‑68 (MQ=255) cggcACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTa < 1:20334094/67‑1 (MQ=255) cggcACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTa > 1:27017654/1‑67 (MQ=255) ggcACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTAcc < 1:1341583/68‑1 (MQ=255) aCTTCTACCGCCGCTTCATCGGTTAACCGTCAAAAATCGGCAACATCAAATACAACTTAATTACCAgc < 1:14056025/68‑1 (MQ=255) aCTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAgc < 1:5896593/68‑1 (MQ=255) aCTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAgc < 1:21573333/68‑1 (MQ=255) aCTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAgc < 1:11919604/68‑1 (MQ=255) aCTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAgc < 1:9319411/68‑1 (MQ=255) cTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAgcg < 1:621475/68‑1 (MQ=255) cTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAgcg < 1:10374405/68‑1 (MQ=255) ttCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAgcgc < 1:4161539/68‑1 (MQ=255) ttCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAgcgc > 1:26277289/1‑68 (MQ=255) ttCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAgcgc < 1:29242867/68‑1 (MQ=255) cTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCAt < 1:6582719/68‑1 (MQ=255) tACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCAtt > 1:1364572/1‑68 (MQ=255) aCCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTg > 1:17270488/1‑68 (MQ=255) cgccgcTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACGAGCGCATTGAc > 1:2666165/1‑68 (MQ=255) cgccgcTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTgcc > 1:30989943/1‑66 (MQ=255) cgccgcTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGAc > 1:15075169/1‑68 (MQ=255) cgccgcTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGAc > 1:30545066/1‑68 (MQ=255) cgccgcTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGAc > 1:14390493/1‑68 (MQ=255) gccgcTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTCACg > 1:11508496/1‑68 (MQ=255) ccgcaacaaagacaaatgcctgatacgcttcgcttatcaagcctgcgtattgattcataatttattga < 1:21989325‑M2/68‑65 (MQ=255) cgcaacaaagacaaatgcctgatacgcttcgcttatcaagcctgcgtattgattcataatttattgaa < 1:2985340‑M2/68‑66 (MQ=255) cgcaacaaagacaaatgcctgatacgcttcgcttatcaagcctgcgtattgattcataatttattgaa > 1:20774592‑M2/1‑3 (MQ=255) cgcaacaaagacaaatgcctgatacgcttcgcttatcaagcctgcgtattgattcataatttattgaa < 1:11048084‑M2/68‑66 (MQ=255) cgcaacaaagacaaatgcctgatacgcttcgcttatcaagcctgcgtattgattcataatttattgaa > 1:22699257‑M2/1‑3 (MQ=255) cgcaacaaagacaaatgcctgatacgcttcgcttatcaagcctgcgtattgattcataatttattga > 1:229320‑M2/1‑3 (MQ=255) gcTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGata < 1:5001149/68‑1 (MQ=255) | ATACGCAGGCTTGATAAGCGAAGCGTATCAGGCATTTGTCTTTGTTGCGGCGGCACTTCTACCGCCGCTTCATCGGTTAACCGGCAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATA > CP009273/3820744‑3820877 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |