| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3921522 | 431 (1.120) | 25 (0.070) | 5/100 | NT | 6.2% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 370 (1.080) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
Only 100 of 544 total aligned reads displayed.
GGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCC > CP009273/3921467‑3921601 | ggCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCa > 1:28477648/1‑68 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:10011522‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:21934343‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:28165574‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:11583696‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:6897421‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:31032503‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:32048223‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGACCAg < 1:20948042‑M2/68‑2 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc < 1:23864624‑M2/68‑4 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc < 1:15402037‑M2/68‑4 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc < 1:4029643‑M2/68‑4 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc < 1:6402955‑M2/68‑4 (MQ=255) tgctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggc > 1:18789801‑M2/1‑61 (MQ=255) tgctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggc > 1:594798‑M2/1‑61 (MQ=255) tgctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCt < 1:307750/68‑1 (MQ=255) gctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCt > 1:29853708/1‑67 (MQ=255) tgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTc > 1:7982155/1‑67 (MQ=255) cgcgAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATc < 1:15556813/68‑1 (MQ=255) gcgAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATcc < 1:20355647/68‑1 (MQ=255) gcgAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATc > 1:27829006/1‑67 (MQ=255) gcgAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATc > 1:3643896/1‑67 (MQ=255) gagaGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCg < 1:26590529/68‑1 (MQ=255) agagCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:8715962/1‑68 (MQ=255) agagCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:415961/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:26354737/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:21720962/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:14028180/1‑68 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTCTCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGt < 1:6697549/66‑1 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGt < 1:24404633/66‑1 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGt < 1:28928710/66‑1 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:28055146/1‑67 (MQ=255) gTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagc > 1:13545834‑M2/1‑45 (MQ=255) gTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagc > 1:27397725‑M2/1‑45 (MQ=255) gTCCCTTCCCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagca > 1:16655605‑M2/1‑45 (MQ=255) cccTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagcaga > 1:5797004‑M2/1‑43 (MQ=255) cccTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagcaga > 1:14595185‑M2/1‑43 (MQ=255) cTTCTCTGCTGTAATGATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgc < 1:544240/68‑1 (MQ=255) cTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgc < 1:18403780/68‑1 (MQ=255) cTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgc < 1:31731287/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:11390014/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:17564940/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:1721961/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:25650100/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:16011949/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgc > 1:7426076/1‑67 (MQ=255) tctcTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg > 1:19683074/1‑67 (MQ=255) ctctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGcc > 1:9519269/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:17808314/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:25057707/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:29357504/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:22737913/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:27031202/1‑68 (MQ=255) ctgcttTAATAATTTTTCGCCTCCATCGTCTGAGCAGGCGGCTGGGCATCCCGGTATCAAACCGCCAg < 1:2766792/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:23285429/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg > 1:5214719/1‑68 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:31441768/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg > 1:18965369/1‑68 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:2054188/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:214306/68‑1 (MQ=255) tgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGa < 1:26021672/68‑1 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:13255574/1‑68 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:3325835/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:27241666/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:12663277/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:3872135/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:22934083/1‑68 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAACGCGCCAGATATGa > 1:19396968/1‑67 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa > 1:4405486/1‑67 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:18014701/67‑1 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:23613994/67‑1 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:17474397/67‑1 (MQ=255) taatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCg > 1:11058702/1‑68 (MQ=255) taatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCg > 1:30345925/1‑68 (MQ=255) taatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCg > 1:905800/1‑68 (MQ=255) taatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCg > 1:8099812/1‑68 (MQ=255) aatTTATCGCCGCCAGCGTCTGAGCTGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGa > 1:15013411/1‑68 (MQ=255) atTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGc < 1:6182466/36‑1 (MQ=255) tttATCGCCGCCAGCGTCTGCGCAGGCGGCTTCGCATCCCGGTATCAACGCGCCAGCTATGAGCGaca > 1:4945015/1‑66 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:13411190/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:12932400/1‑68 (MQ=255) gccgccAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgcgc < 1:15200182/68‑1 (MQ=255) gccgccAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgcgc < 1:18616394/68‑1 (MQ=255) gccgccAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgcgc < 1:8309245/68‑1 (MQ=255) ccAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatga > 1:22404136/1‑68 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:10500734/68‑1 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:11983088/68‑1 (MQ=255) cGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGcc > 1:7140235/1‑68 (MQ=255) cGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGcc > 1:10398768/1‑68 (MQ=255) cGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGcc > 1:14393342/1‑68 (MQ=255) tCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCgg > 1:17024527/1‑68 (MQ=255) tCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCgg > 1:25293799/1‑68 (MQ=255) cTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCggg < 1:12299819/68‑1 (MQ=255) cTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCggg < 1:16215031/68‑1 (MQ=255) cTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCggg < 1:21116756/68‑1 (MQ=255) cTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCggg < 1:26789208/68‑1 (MQ=255) cTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCggg < 1:24764650/68‑1 (MQ=255) gcgggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggccatactccac > 1:20111022‑M2/1‑3 (MQ=255) gCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGttt > 1:13813517/1‑67 (MQ=255) gCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGttt > 1:9307791/1‑67 (MQ=255) | GGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCC > CP009273/3921467‑3921601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |