Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 246563 247250 688 106 [95] [99] 107 lafU pseudogene, lateral flagellar motor protein fragment

Only 100 of 106 total aligned reads displayed.

GCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCTGCA  >  CP009273/246496‑246599
                                                                  |                                     
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:10396578/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:2560730/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:11213252/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:11252129/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:2795355/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:20527746/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:24558347/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:7627030/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:20198693/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACACTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:2938437/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:28635718/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:3091945/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:28952806/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:1512315/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:15086339/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:24393791/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:19528435/67‑1 (MQ=255)
      aCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 >  1:12251964/1‑67 (MQ=255)
      aCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 >  1:8281755/1‑67 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:19276781/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:26806696/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:16180161/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:14999685/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:13739051/67‑1 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        <  1:29024153/68‑1 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        <  1:23345879/68‑1 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACACCGTCAGTAAATCCGAGCGt                         <  1:22147104/67‑1 (MQ=255)
                 aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     >  1:16631397/1‑68 (MQ=255)
                 aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     <  1:29793835/68‑1 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:5743967/1‑68 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:5343125/1‑68 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   <  1:23335551/68‑1 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:3535232/1‑68 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:30882326/1‑68 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:30779385/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:30161921/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:12566702/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:13510273/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:15887461/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:17722901/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCAt                 >  1:7676058/1‑68 (MQ=255)
                      cGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCAtt                <  1:4801519/68‑1 (MQ=255)
                         ccccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTAt              <  1:23936360/67‑1 (MQ=255)
                          cccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATc             <  1:17045029/67‑1 (MQ=255)
                          cccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATc             <  1:10951312/67‑1 (MQ=255)
                          cccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATc             <  1:12011470/67‑1 (MQ=255)
                            cTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgcc          <  1:4603497/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAATCATTATcgccgc        <  1:20402606/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:29241004/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:30532857/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:16541938/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:20718649/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:20413279/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:20345245/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:11086191/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:262173/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:26823613/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:26687521/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGGCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:18092080/68‑1 (MQ=255)
                               tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:24319179/1‑67 (MQ=255)
                               tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:12779370/1‑67 (MQ=255)
                               tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCcgcg       <  1:17633040/68‑1 (MQ=255)
                                 gTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     >  1:2022221/1‑68 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:23299389/1‑67 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:2944870/1‑67 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:26804512/1‑67 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:19148355/1‑67 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:16635081/1‑67 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:23554481/67‑1 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:22415393/67‑1 (MQ=255)
                                   gacgacAATAATGTTGATTGTCATCAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:23590937/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAACTCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:19738878/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:4229787/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:26534738/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:17419436/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:567373/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:6054534/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:67662/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:695934/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:7412777/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:15754752/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:12016780/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:9050027/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:24918229/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:28513839/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:18799608/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:19790846/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:18081031/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:21455216/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:29281506/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    <  1:18636810/67‑2 (MQ=255)
                                   gacgacAATAAAGTTGAGTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:21249165/68‑3 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:6763540/67‑4 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:15693970/67‑4 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:22910004/67‑4 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  >  1:7605023/1‑64 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:21954846/67‑4 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:17151460/67‑4 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:17546813/67‑4 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:31464971/67‑4 (MQ=255)
                                                                  |                                     
GCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCTGCA  >  CP009273/246496‑246599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑