| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4047497 | 495 (1.040) | 41 (0.100) | 11/94 | NT | 8.6% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 452 (1.130) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
Only 100 of 180 total aligned reads displayed.
AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4047422‑4047497‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggcaGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGC < CP009273/4047517‑4047453 AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:10367624/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:11367572/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC < 1:11514910/68‑1AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC < 1:33442314/68‑1AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:24261249/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:20037006/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:9503669/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:27044922/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:14794443/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTCATTCAAACAGTTC > 1:21600761/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGGTGATTCAAACAGTTC > 1:6540446/1‑68 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCTAACAGTTCG > 1:21801137/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:18518155/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:3412455/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:9549970/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:34208823/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:20347790/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:13813712/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:19734939/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:23295234/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:26286270/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:18480389/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:2122571/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:17524208/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:8176877/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:37207153/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:16586465/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:10301057/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:4095990/1‑67 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCC > 1:34399330/1‑68 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCC < 1:729822/68‑1 GCGTCGCCCAGCTGTCCGGTTGCATATGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCG > 1:2508611/1‑68 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:21536946/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:37253956/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:2555856/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:2589917/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:3063178/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:38406037/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:15897771/68‑1 TCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGC > 1:35507762/1‑68 TCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGC > 1:4572701/1‑68 TGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAG > 1:33931043/1‑68 TGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAG > 1:7366754/1‑68 CGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGAGTCAGGATTTGCC > 1:30352918/1‑68 GAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATGTGCCC > 1:7690083/1‑68 ACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGg < 1:7073600/68‑2 ACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGA > 1:35650988/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTGAGGATTTGCCCGGCGAACTGT > 1:21676410/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGCTTTGCCCGGCGCACTGg > 1:36870558/1‑67 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGg > 1:37171686/1‑67 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGg > 1:12773514/1‑67 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGT > 1:6223725/1‑68 ACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAA > 1:28577235/1‑68 ACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAA > 1:19131997/1‑68 ACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAA > 1:35897793/1‑68 ACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAA > 1:14992271/1‑68 ACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAA > 1:12924093/1‑68 ACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAA > 1:32624395/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTTACCGGCGAACTGTTTGAATC > 1:32215448/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATC > 1:16274137/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATC > 1:11580254/1‑68 TGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCAGGCGAACTGTTTGAATCAAC > 1:29596439/1‑68 ATTCAAACAGTTCGCCGGGCAGGTAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGG > 1:26798721/1‑68 ATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGG > 1:37314271/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGG > 1:29920006/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGG > 1:19448073/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGG > 1:1682234/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGG > 1:33367376/1‑68 CAGTTCGCCGGGCAGGAAGTGTTGCTTCAGGATGTGCCCGGCGAACTGTTTGACTCAACGGTTGCGGA > 1:31283811/1‑68 AGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAG > 1:483582/1‑68 AGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAG > 1:1477156/1‑68 AGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAG > 1:37760957/1‑68 AGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAG > 1:28848482/1‑68 TCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT > 1:25355886/1‑68 TCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT > 1:38414458/1‑68 CGCCGGGCAGGTAGTGTTGATTCAGGATTTGCCGGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:31785428/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTA < 1:909734/68‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTA < 1:14115734/68‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:22308940/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:21583518/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:2090918/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:20664848/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:18231205/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:993966/67‑1 GCCGGGCAGGAAGTGTTTAATCAGGATTTGCCCGGCGTACTGTTTGAATCAACGGTTGCGGAGAGTAC < 1:36267287/68‑1 GCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT > 1:30493179/1‑66 GCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT > 1:31598279/1‑66 GCCGGGCAGGAAGTGTTGATTAAGCATTTGCCCGGCGAACTGTTTGAATCAACGGTTCCGGAGAGT > 1:8531887/1‑66 CCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGCACTGTTTGAATCAACGGTTGCGGTGAGTACT > 1:34987327/1‑68 CCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT > 1:38851363/1‑68 CGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT < 1:5539786/67‑1 CGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT < 1:21251889/67‑1 CGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT < 1:30008336/67‑1 GGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTC > 1:16618764/1‑68 GGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTC < 1:8290099/68‑1 GGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTC > 1:36709961/1‑68 GGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTC < 1:12568344/68‑1 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGC > 1:31972724/1‑68 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCG < 1:20561952/67‑1 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCG < 1:31417963/67‑1 AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4047422‑4047497‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggcaGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGC < CP009273/4047517‑4047453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |