New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4047497495 (1.040)41 (0.100) 11/94 NT 8.6% coding (1142/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein
?CP009273 = 4047517 452 (1.130)coding (1122/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein

Only 100 of 701 total aligned reads displayed.

TTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG  >  CP009273/4047450‑4047584
                                                                   |                                                                   
    cGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc                                                                  <  1:21568305‑M2/67‑4 (MQ=255)
    cGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc                                                                  <  1:35659662‑M2/67‑4 (MQ=255)
     gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc                                                                <  1:37373386‑M2/68‑6 (MQ=255)
     gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc                                                                <  1:17587902‑M2/68‑6 (MQ=255)
     gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc                                                                >  1:16618764‑M2/1‑63 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:27378204‑M2/67‑10 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:18977791/68‑1 (MQ=255)
           ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCggcggc                                                          <  1:11840450/68‑1 (MQ=255)
            tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         >  1:35294720/1‑68 (MQ=255)
            tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         <  1:38580868/68‑1 (MQ=255)
            tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         <  1:345484/68‑1 (MQ=255)
             ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaact                                                        >  1:29483195‑M2/1‑55 (MQ=255)
             ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaact                                                        >  1:37760957‑M2/1‑55 (MQ=255)
             ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                                        >  1:3828448/1‑68 (MQ=255)
              tcCGCAACCGTTGAGTCAAACAGTTCGCCGGGCACATCCTGAAGCAACACTTCCtgcccggcgaactg                                                       >  1:31283811‑M2/1‑54 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:1365027/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:32539475/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:1592451/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:856510/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:28161007/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACACTTCGCAGGGCAAATCCTGAATCAACCCTTCCTGCCCGGCGGCCGTc                                                      >  1:26616680/1‑68 (MQ=255)
                cGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     <  1:16207282/68‑1 (MQ=255)
                 gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     >  1:20050380/1‑67 (MQ=255)
                 gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     >  1:34941627/1‑67 (MQ=255)
                  cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   >  1:29045257/1‑68 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:26342807/67‑1 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:30534967/67‑1 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:24106856/67‑1 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:14220154/67‑1 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:19303990/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:36785303/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:11578937/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:25337543/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:24776020/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:15767091/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:31475427/1‑68 (MQ=255)
                       gTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAg                                              <  1:22367469/68‑1 (MQ=255)
                         tGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGcc                                            >  1:27694267/1‑68 (MQ=255)
                         tGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGcc                                            >  1:3923781/1‑68 (MQ=255)
                          gATTCAAACAGTTCGCCGGTAAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacg                                           >  1:32215448‑M2/1‑42 (MQ=255)
                          gATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacg                                           >  1:1637548‑M2/1‑42 (MQ=255)
                          gATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacg                                           >  1:9226745‑M2/1‑42 (MQ=255)
                          gATTCAAACAGTGCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacg                                           >  1:31850064‑M2/1‑42 (MQ=255)
                            ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc                                         >  1:23258998/1‑68 (MQ=255)
                               aacCAGTTCGCCGGGCAAAGCCTGAATCAACACACCCtccccggcgaactgtttgaatcaacggttgc                                      >  1:14923765‑M2/1‑37 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:22874281/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:21832026/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:12017202/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:1092437/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:19694072/1‑68 (MQ=255)
                                  cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg                                   >  1:9479218/1‑68 (MQ=255)
                                  cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTACCCACCGGCAgg                                   >  1:7691045/1‑68 (MQ=255)
                                   aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  >  1:36127348/1‑68 (MQ=255)
                                   aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  >  1:37167403/1‑68 (MQ=255)
                                   aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  >  1:7171688/1‑68 (MQ=255)
                                   aGTTCGCCGGGCAAATCCTCAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  >  1:13420022/1‑68 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  <  1:32796317/65‑1 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  <  1:33161385/65‑1 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  <  1:10436325/65‑1 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  <  1:169379/65‑1 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtt                               >  1:5473730/1‑68 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtt                               >  1:36516281/1‑68 (MQ=255)
                                           GGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCa                          <  1:28836204‑M1/68‑1 (MQ=255)
                                            ggCAAATCCTGACTCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcggagagtacttcg                         >  1:30352918‑M2/1‑24 (MQ=255)
                                             GCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCCGCGGCAGGTGTTTTCCa                          <  1:5746006‑M1/66‑1 (MQ=255)
                                                   ccTGAATCAACACTTCCTGCCCGGCCGCCATCACCGTTAGCCAGCGGCAGGTGTTTTACAGCTGgcgc                  >  1:24357263/1‑68 (MQ=255)
                                                       aaTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGt              >  1:18660770/1‑68 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:820585/68‑1 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:2262712/1‑68 (MQ=255)
                                                         tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:20594901/1‑67 (MQ=255)
                                                         tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:9754350/68‑1 (MQ=255)
                                                         tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:5205858/68‑1 (MQ=255)
                                                         tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:22146962/68‑1 (MQ=255)
                                                         tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCACACGTTg            <  1:13027665/68‑1 (MQ=255)
                                                          cAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGc           <  1:33376889/68‑1 (MQ=255)
                                                          cAACACTTCCTGCCCGGCGGCCATCACCGTAAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGc           <  1:33731857/68‑1 (MQ=255)
                                                             cacTTCCTGCCCGGCGGCCCTCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:18266936/1‑68 (MQ=255)
                                                             cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCGCGTTGCCTg        >  1:14510405/1‑68 (MQ=255)
                                                             cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:3094392/1‑68 (MQ=255)
                                                             cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:10084457/1‑68 (MQ=255)
                                                              acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTgg       <  1:12749912/68‑1 (MQ=255)
                                                              acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:17281031/1‑67 (MQ=255)
                                                              acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:29990879/1‑67 (MQ=255)
                                                              acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:15217176/1‑67 (MQ=255)
                                                              acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:25899742/1‑67 (MQ=255)
                                                              acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:622079/1‑67 (MQ=255)
                                                               cTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTgg       >  1:4303374/1‑67 (MQ=255)
                                                                 tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc     >  1:23656542/1‑67 (MQ=255)
                                                                 tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc     >  1:26975746/1‑67 (MQ=255)
                                                                 tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc     >  1:28493065/1‑67 (MQ=255)
                                                                 tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCa    <  1:8954206/68‑1 (MQ=255)
                                                                 tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGATGGCGCAAGttgccttgcc     >  1:46401/1‑67 (MQ=255)
                                                                  ccTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   >  1:38919293/1‑68 (MQ=255)
                                                                  ccTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   >  1:24998323/1‑68 (MQ=255)
                                                                  ccTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   >  1:10989542/1‑68 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   >  1:6685293/1‑67 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:39504110/68‑1 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:20975150/68‑1 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:34233014/68‑1 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:21265433/68‑1 (MQ=255)
                                                                   |                                                                   
TTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG  >  CP009273/4047450‑4047584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.