| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4616991 | 192 (0.400) | 7 (0.020) | 3/96 | NT | 4.0% | coding (1263/1383 nt) | radA | DNA repair protein |
| ? | CP009273 | = 4616997 | 169 (0.420) | coding (1269/1383 nt) | radA | DNA repair protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTGGTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4616917‑4616991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgaaaACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCTGCCAGC < CP009273/4616997‑4616931 TTTGGTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGC > 1:24685623/1‑68TTTGGTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGC > 1:12513429/1‑68 TTGGTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCG > 1:36370444/1‑68 GGTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGC < 1:29891276/68‑1 GGTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGC < 1:11447228/68‑1 GGTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGC < 1:2193207/68‑1 GGTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGC < 1:6247617/68‑1 GTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCG > 1:33428269/1‑68 GTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCG > 1:3522486/1‑68 GTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCG > 1:24701857/1‑68 GTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCG > 1:1877325/1‑68 TGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGA > 1:38010609/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCTAA > 1:29356808/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:13078616/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:33007513/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:10243476/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:36039842/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:9142101/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:10555105/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:29832813/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA < 1:10189421/68‑1 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:10836718/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA < 1:23632344/68‑1 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:23534320/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:20238024/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:18613835/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:18500188/1‑68 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA < 1:16399820/68‑1 GAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAA > 1:16624953/1‑68 CCAGCGGTCAGGGAACGAATCTCTGAAGCGGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCC < 1:29215337/67‑1 ACGAATCTCTGAAGCGGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGGTGGGCACC > 1:19034125/1‑68 ACGAATCTCTGAAGCGGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACC > 1:1132548/1‑68 ACGAATCTCTGAAGCGGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACC > 1:32195446/1‑68 ACGAATCTCTGAAGCGGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACC > 1:28759951/1‑68 ACGAATCTCTGAAGCGGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACC > 1:12089688/1‑68 GAATCTCTGAAGCGGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGG > 1:13655498/1‑68 GCGGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCC > 1:5547580/1‑67 GCGGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCC > 1:3046246/1‑67 GCGGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCC > 1:8221950/1‑67 GGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCT < 1:3919997/68‑1 GGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCT < 1:25985486/68‑1 GGCGAAAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCT < 1:24506860/68‑1 AAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCTGCCAG < 1:31197938/68‑1 AAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCTGCCAG < 1:30275470/68‑1 AAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCTGCCAG < 1:29475536/68‑1 AAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCTGCCAG < 1:26696343/68‑1 AAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCTGCCAG < 1:11795208/68‑1 AAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCTGCCAG < 1:10261791/68‑1 AAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCTGCCA < 1:31087524/67‑1 AAACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCTGCCA < 1:16148704/67‑1 AACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCTGCCAGC < 1:7959248/68‑1 AACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCTGCCAGC < 1:9691041/68‑1 TTTGGTGAAGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4616917‑4616991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgaaaACCGTGTTTCGCCGCTTCAGAGATTCGTTCCTGACCGCTGGGCACCGGGCGGATCTCCCCTGCCAGC < CP009273/4616997‑4616931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |