| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4616991 | 192 (0.400) | 7 (0.020) | 3/96 | NT | 4.0% | coding (1263/1383 nt) | radA | DNA repair protein |
| ? | CP009273 | = 4616997 | 169 (0.420) | coding (1269/1383 nt) | radA | DNA repair protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 258 total aligned reads displayed.
AGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGA > CP009273/4616925‑4617058 | aGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAac < 1:37497503/68‑1 (MQ=255) gTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAac > 1:8053040/1‑67 (MQ=255) tCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAacac > 1:10412657/1‑68 (MQ=255) tCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAacac > 1:2875848/1‑68 (MQ=255) gggCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACgg < 1:9225523/68‑1 (MQ=255) gggCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACgg < 1:35686554/68‑1 (MQ=255) gCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGt < 1:23027814/67‑1 (MQ=255) gCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGt < 1:3622604/67‑1 (MQ=255) cTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTtt < 1:30275470‑M2/68‑3 (MQ=255) cTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTtt < 1:26696343‑M2/68‑3 (MQ=255) ggAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgccgc > 1:3046246‑M2/1‑58 (MQ=255) ggAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgccgc > 1:5547580‑M2/1‑58 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCggg < 1:14586888/67‑1 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCggg < 1:14635300/67‑1 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:25889868/1‑68 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:30631915/1‑68 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:22251918/1‑68 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:34161319/1‑68 (MQ=255) gagaTCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGc > 1:1124661/1‑68 (MQ=255) agaTCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCg > 1:2746629/1‑68 (MQ=255) agaTCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCg > 1:6312627/1‑68 (MQ=255) agaTCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCg > 1:3528055/1‑68 (MQ=255) gaTCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCg < 1:24534342/67‑1 (MQ=255) gaTCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCg < 1:35056150/67‑1 (MQ=255) tCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt > 1:25789449/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt > 1:3206982/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt > 1:31728738/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt > 1:22655876/1‑68 (MQ=255) tCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt < 1:27589309/68‑1 (MQ=255) tCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGAtt > 1:25629592/1‑68 (MQ=255) ccGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTg > 1:13989857/1‑68 (MQ=255) ccGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:27692127/1‑68 (MQ=255) ccGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:15740051/1‑68 (MQ=255) ccGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTcc > 1:38555619/1‑68 (MQ=255) ccGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTACGCCGGGCGATTGTTcc > 1:29446594/1‑68 (MQ=255) cGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcg > 1:7274906/1‑68 (MQ=255) ggTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgccgcttcagagattcgt > 1:32195446‑M2/1‑46 (MQ=255) ggTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTtttcgccgcttcagagattcgt > 1:1132548‑M2/1‑46 (MQ=255) ggTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcg > 1:8706368/1‑67 (MQ=255) tGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggc < 1:8420287/67‑1 (MQ=255) gCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggcgg < 1:2522636/68‑1 (MQ=255) gCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggcgg < 1:32412491/68‑1 (MQ=255) gCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggcgg < 1:5783433/68‑1 (MQ=255) gCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggcg > 1:29562754/1‑67 (MQ=255) gCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCcggcg < 1:4055018/67‑1 (MQ=255) ccAGCGGTCAGGGAACGAATCTCTGAAGCGGCGAAAaccgtgtttcgccgcttcagagattcgttcc < 1:29215337‑M1/67‑32 (MQ=255) ccAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCt > 1:4250741/1‑68 (MQ=255) gCGGTCA‑GGGACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:6586028/1‑68 (MQ=255) gCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:27394761/1‑68 (MQ=255) gCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:38267793/1‑68 (MQ=255) gCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:24902131/1‑68 (MQ=255) gCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:33817732/1‑68 (MQ=255) gCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:6628378/1‑68 (MQ=255) gCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:14256224/1‑68 (MQ=255) gCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:20720807/1‑68 (MQ=255) gCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAAc > 1:17052470/1‑68 (MQ=255) ggTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGt > 1:12181445/1‑68 (MQ=255) ggTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTCTTCCGGCGGCTAACGt > 1:26426216/1‑68 (MQ=255) tCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTg > 1:20951260/1‑67 (MQ=255) cA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGcc > 1:38941230/1‑68 (MQ=255) cA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGc < 1:255079/67‑1 (MQ=255) aaCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaa > 1:16518753/1‑68 (MQ=255) aaCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGa < 1:18862982/66‑1 (MQ=255) aCGAATCTCTGAAGCGGCGAAAaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcacc > 1:12089688‑M1/1‑22 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaa > 1:22585285/1‑68 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaa > 1:19817612/1‑68 (MQ=255) aCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGaaaa > 1:36897389/1‑68 (MQ=255) gAATCTCTGAAGCGGCGAAAaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgg > 1:13655498‑M1/1‑20 (MQ=255) aTCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgc < 1:24167629/68‑1 (MQ=255) tctcTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgcg < 1:383537/68‑1 (MQ=255) tctcTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgc > 1:9574985/1‑67 (MQ=255) ctctGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAgcgc < 1:1771575/68‑1 (MQ=255) ctGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCg > 1:9396042/1‑68 (MQ=255) ctGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCg > 1:18663581/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGaa < 1:23673077/67‑1 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:28990443/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:18198361/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:34613869/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:24262620/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:12948577/1‑68 (MQ=255) aGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAg > 1:22792207/1‑68 (MQ=255) gcggcgAAAaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctcc > 1:8221950‑M1/1‑9 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:36376392/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:12585424/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:22315734/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:34011451/1‑68 (MQ=255) gcggcgAAACACGGTTTTCGCCGCGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg > 1:36666945/1‑68 (MQ=255) cggcgAAACACGGTTTTCGCCGGGCGATTTTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgtg < 1:7129950/68‑3 (MQ=255) ggcgAAAaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctcccct < 1:3919997‑M1/68‑62 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg < 1:5109340/66‑1 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg < 1:31348437/66‑1 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg < 1:30374840/66‑1 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg < 1:39416357/66‑1 (MQ=255) ggcgAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAgg < 1:1710220/66‑1 (MQ=255) aaaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctcccctgccag < 1:31197938‑M1/68‑67 (MQ=255) aaaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctcccctgccag < 1:10261791‑M1/68‑67 (MQ=255) aaaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctcccctgcca < 1:16148704‑M1/67‑66 (MQ=255) aaaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctcccctgcca < 1:31087524‑M1/67‑66 (MQ=255) acacGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGa < 1:17904652/68‑1 (MQ=255) aaccgtgtttcgccgcttcagagattcgttcctgaccgctgggcaccgggcggatctcccctgccagc < 1:7959248‑M1/68‑68 (MQ=255) | AGTCGGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCA‑GGAACGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGCGATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGA > CP009273/4616925‑4617058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |