| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 25775 | NA (NA) | 7 (0.020) | 4/96 | NT | NA | noncoding (66/86 nt) | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 3847093 | NA (NA) | noncoding (22/36 nt) | REP279 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP279 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 162 total aligned reads displayed.
ATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/25701‑25775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggataagATGCGTCAGCATCGCATCCGACACCAACCCGCACGCTAAATATAAAAGGGGAGCGGTTTC < CP009273/3847093‑3847034 ATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGCTTGCTGCGAAATCGTAGGCC > 1:30046693/1‑68ATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTTCTGCGAAATCGTAGGCC > 1:35407526/1‑68ATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCC > 1:28650865/1‑68ATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCC > 1:16610120/1‑68 TAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACTGATTGCTGCGAAATCGTAGGCCG < 1:7183458/68‑1 TAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCG < 1:6682255/68‑1 TAAACCCTGCCGGACGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCG < 1:33034177/68‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTTCGAAATCGTAGGCCGG < 1:37920890/68‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTCGGCCGG > 1:6083849/1‑68 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:23366495/68‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:10592533/68‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:28436317/68‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG > 1:31082722/1‑68 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:34501354/68‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:34531536/68‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:459891/68‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:4814962/68‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:5269553/68‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:6548939/68‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:8826407/68‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG > 1:13436768/1‑68 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG > 1:16127852/1‑68 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:18274342/68‑1 AAACCCTGCCGGAGGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:12792917/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:36710694/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:33487312/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:33600077/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:26446260/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:2418415/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:28292112/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:15611857/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:31274349/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:17723259/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:30549866/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:6378765/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:10557348/68‑1 AACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAACCGTAGGCCGGA < 1:25156324/68‑1 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:31450365/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:15648059/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:19818784/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:30432061/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:32068575/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:34853013/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:360739/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:37517177/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:38765360/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:39375044/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:608886/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:9282294/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:23133550/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:21377745/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:21822195/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:20943507/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:22304659/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:2266829/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:20314792/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:19560939/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:2382184/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:25415456/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:2788396/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:29645459/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCCGCGAAATCGTAGGCCGGAT > 1:768097/1‑68 ACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGACTACAGATTGCTGCGAAATCGTAGGCCGGAT > 1:30392272/1‑68 CCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATA > 1:17931917/1‑68 CCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATA > 1:30117114/1‑68 CCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATA > 1:27612246/1‑68 CCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATA > 1:38117058/1‑68 CCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATA > 1:35672192/1‑68 CCCTGCCGGATGCGATGCTGACGCAAATTATCCGGCCTACAGATTGCTCCGAAATCGTAGGCCGGATA > 1:29336230/1‑68 CCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAA > 1:29011773/1‑68 CCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAA > 1:22094503/1‑68 CCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAA > 1:5605272/1‑68 CCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAA > 1:37530133/1‑68 CCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAA > 1:23131559/1‑68 CCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAA < 1:32967171/68‑1 CCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAA > 1:18825070/1‑68 CCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAA > 1:34359384/1‑68 CCTGCCGGATGCGATGCTGACGCATCTTAACCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAA > 1:28453649/1‑68 CTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAG < 1:8383186/68‑1 CTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAG < 1:32276174/68‑1 CTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAG < 1:22363537/68‑1 CTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAG < 1:27488994/68‑1 CTGCCGGATCCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAG < 1:14294267/68‑1 GCCGGATGCGATGCTGACGCATCTTATCCGGCCCACAGATTGCTGCGAAATCGTAGGCCGGATAAGAT < 1:16745981/68‑1 CGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGATG < 1:14431784/67‑1 GGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGATGCG < 1:28522753/68‑1 GGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGATGCG < 1:8881159/68‑1 GGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGATGCG < 1:39473016/68‑1 GGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGATGCG < 1:37208737/68‑1 GGATGCGATGCTGACGCATCTTATCCGGCCTACAGAATGCTGCGAAATCGTAGGCCGGATAAGATGCG < 1:31574043/68‑1 GGATGCGATGCTGACGCATCTTATCCGGCCCACAGATTGCTGCGAAATCGTAGGCCGGATAAGATGCG < 1:14237788/68‑1 GATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGATGCGTCAGCA < 1:22108760/68‑1 GATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGATGCGTCAGC < 1:20243125/67‑1 TGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGATGCGTCAGCATCGCA < 1:15449264/68‑1 CGGATAAGATGCGTCAGCATCGCATCCGACGCCAACCCGCACGCTAAATATAAAAGGGGAGCGGTTT > 1:36082521/1‑67 CGGATAAGATGCGTCAGCATCGCATCCGACACCAACCCGCACGCTAAATATAAAAGGGGAGCGGTTT < 1:12891439/67‑1 CGGATAAGATGCGTCAGCATCGCATCCGACACCAACCCGCACGCTAAATATAAAAGGGGAGCGGTTT > 1:32679036/1‑67 GGATAAGATGCGTCAGCATCGCATCCGACACCAACCCGCACGCTAAATATAAAAGGGGAGCGGTTTC > 1:14678344/1‑67 GGATAAGATGCGTCAGCATCGCATCCGACACCAACCCGCACGCTAAATATAAAAGGGGAGCGGTTTC < 1:36219909/67‑1 GGATAAGATGCGTCAGCATCGCATCCGACACCAACCCGCACGCTAAATATAAAAGGGGAGCGGTTTC > 1:31318873/1‑67 ATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/25701‑25775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggataagATGCGTCAGCATCGCATCCGACACCAACCCGCACGCTAAATATAAAAGGGGAGCGGTTTC < CP009273/3847093‑3847034 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |