| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 25775 | NA (NA) | 7 (0.020) | 4/96 | NT | NA | noncoding (66/86 nt) | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 3847093 | NA (NA) | noncoding (22/36 nt) | REP279 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP279 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 652 total aligned reads displayed.
CTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTAC > CP009273/25708‑25841 | tGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAgg < 1:22686618/68‑1 (MQ=255) tGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAgg < 1:8657042/68‑1 (MQ=255) tGCCGGATGCGAGGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAgg < 1:22390950/68‑1 (MQ=255) cGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCg < 1:10182432/67‑1 (MQ=255) cGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGt > 1:11862408/1‑68 (MQ=255) cGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGt > 1:25865566/1‑68 (MQ=255) gatgcGGACGCATCTTATCCGGCCTACAGATTGCCGCGAAAGCGTAGGCCGGATAAGatgcgtcagc < 1:37853826‑M1/67‑11 (MQ=255) tgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgccgc < 1:24853625/68‑1 (MQ=255) gcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:10898181/1‑68 (MQ=255) gcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:1222287/1‑68 (MQ=255) gcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:27528441/1‑68 (MQ=255) cGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg < 1:37069229/68‑1 (MQ=255) cGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCg > 1:12699923/1‑67 (MQ=255) cGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 1:29332238/67‑1 (MQ=255) aTCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa < 1:35529000/67‑1 (MQ=255) tATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaaaaa > 1:13503978/1‑67 (MQ=255) tATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAAt < 1:4157306/68‑1 (MQ=255) aTCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATc < 1:20936452/68‑1 (MQ=255) aTCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATc < 1:19797068/68‑1 (MQ=255) tCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAAt > 1:27854169/1‑66 (MQ=255) tCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAAt > 1:33881432/1‑66 (MQ=255) tCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAAt > 1:17608207/1‑66 (MQ=255) tCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATcc < 1:6710909/68‑1 (MQ=255) ccGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCt > 1:32524295/1‑68 (MQ=255) ccGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCt > 1:30257224/1‑68 (MQ=255) ccGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCt > 1:30462566/1‑68 (MQ=255) ccGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCt > 1:16020417/1‑68 (MQ=255) ccGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCt > 1:38612856/1‑68 (MQ=255) ccGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCt > 1:6362513/1‑68 (MQ=255) cGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCtt > 1:8321971/1‑68 (MQ=255) cGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCtt > 1:21979774/1‑68 (MQ=255) ccTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTaaa > 1:31264685/1‑68 (MQ=255) ccTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTaaa > 1:8863438/1‑68 (MQ=255) cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat < 1:33557520/68‑1 (MQ=255) cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat < 1:37345180/68‑1 (MQ=255) cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat < 1:25113016/68‑1 (MQ=255) cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat < 1:7851357/68‑1 (MQ=255) cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat < 1:10491934/68‑1 (MQ=255) cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat < 1:15049714/68‑1 (MQ=255) cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat < 1:16431897/68‑1 (MQ=255) cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat < 1:19034155/68‑1 (MQ=255) tACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAata < 1:20672902/68‑1 (MQ=255) aGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATaa > 1:11206575/1‑68 (MQ=255) aGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATaa > 1:9204232/1‑68 (MQ=255) aGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATaa > 1:23781675/1‑68 (MQ=255) gATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAag > 1:36059033/1‑68 (MQ=255) ttGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAaga > 1:32848284/1‑67 (MQ=255) ttGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAaga < 1:31677112/67‑1 (MQ=255) ttGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAaga < 1:29772244/67‑1 (MQ=255) ttGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAaga < 1:14177451/67‑1 (MQ=255) tgctgcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGc < 1:36452172/68‑1 (MQ=255) gctgcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCa > 1:20328996/1‑68 (MQ=255) gctgcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCa > 1:15442082/1‑68 (MQ=255) gctgcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCa > 1:36896548/1‑68 (MQ=255) gctgcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCa > 1:4008519/1‑68 (MQ=255) gcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAAc < 1:32281880/68‑1 (MQ=255) cGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATg > 1:34827869/1‑68 (MQ=255) cGTACGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATg < 1:27042271/68‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCAAAATCCTTAAACATAAGAGCAAACCTGCATGt < 1:28565347/68‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGt < 1:5716143/68‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGt < 1:34200097/68‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGt < 1:24613658/68‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGt < 1:18311696/68‑1 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTgt > 1:33030275/1‑67 (MQ=255) cGGATAAGGCGTTTACGCGGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:18632534/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAATTCCTTAAATATAAGATCAAACCTGCTTGTCTTaa < 1:38364247/67‑1 (MQ=21) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:34583862/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:39433131/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:5177072/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:5612487/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:6227816/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:1442959/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:15798788/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:6894524/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:7580922/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:13070393/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:37580302/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:9590159/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:21131771/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:2427184/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:23457795/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:2185108/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:26142554/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:28221407/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:28736623/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:19306237/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:30826106/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:32022362/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:1790574/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:17402045/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:3525703/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:17135061/67‑1 (MQ=255) ggATAAGatgcgtcagcatcgcatccgacaccaacccgcacgctaaatataaaaggggagcggtttc > 1:14678344‑M1/1‑7 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATc < 1:2628838/68‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGt < 1:4766584/68‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGt < 1:16691679/68‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGt < 1:26659224/68‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGt > 1:21374796/1‑68 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGt > 1:2540814/1‑68 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGt < 1:12413998/68‑1 (MQ=255) | CTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTAC > CP009273/25708‑25841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |