| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 232154 | 282 (0.590) | 21 (0.050) | 6/92 | NT | 8.0% | coding (336/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids |
| ? | CP009273 | = 232160 | 252 (0.650) | coding (330/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids | |||||
Only 100 of 144 total aligned reads displayed.
GCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/232080‑232154‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgatgctgcATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAACG < CP009273/232160‑232095 CCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA > 1:10252886/1‑68 CCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA > 1:11207799/1‑68 CCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA > 1:31756896/1‑68 CCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA > 1:3843215/1‑68 CCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA < 1:14134673/68‑1 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT < 1:33138931/68‑1 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT < 1:27403831/68‑1 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT < 1:19107132/68‑1 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT < 1:5012193/68‑1 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA < 1:22572561/67‑1 GTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT > 1:10046964/1‑66 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCGATTTGATTTGATGCTG < 1:37221272/68‑1 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:1196876/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:23986464/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:38737705/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:37660351/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:11957759/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT < 1:2946095/67‑1 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:3877088/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:7444707/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:18939064/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:29716676/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:35604633/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:35029517/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:156821/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT < 1:6386802/67‑1 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATG < 1:31160277/65‑1 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATG < 1:33315467/65‑1 CATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC < 1:28029884/68‑1 CATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC < 1:2476024/68‑1 CATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC < 1:18666175/68‑1 ACCCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCC > 1:32027550/1‑68 ACCCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCC > 1:3119734/1‑68 ACCCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCC > 1:38635278/1‑68 ACCCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCC > 1:19842267/1‑68 CCCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGTTTGGGTTAAAGGCCA > 1:4927801/1‑68 CCCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCA > 1:28971196/1‑68 CCCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCA > 1:30273930/1‑68 CCCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCA > 1:20185180/1‑68 CCCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATAAAAT‑GGGATTGGGTTAAAGGCCA > 1:20387963/1‑68 CCATTCCCATTTGATTTGATGCTGCATTGGGGGAGCATCAGATCAAAT‑GGGAATGGGTTTAAGGGCAT > 1:38101808/1‑68 TCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCG > 1:19693168/1‑68 CCCATTTGATTTGATGCTGGATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCG > 1:18058410/1‑67 CCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGG > 1:33926602/1‑68 CCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAATGGGGAATGGGTTAAAGGCCAAGCCGG > 1:38092368/1‑68 CCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGG > 1:23176874/1‑67 TTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACAC > 1:5825093/1‑67 TTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGA > 1:21141591/1‑68 TTGATGCTGCAATGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAA < 1:20848079/68‑1 GATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAA < 1:36590787/68‑1 GATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAA < 1:25281800/68‑1 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:35685488/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:4586705/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:9692893/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:16756386/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:34583046/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:27446923/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAGAGGCCATGCCGGACACCCGGAAAACG > 1:36956069/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACCCCCGGAAAACG > 1:26243187/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG > 1:971227/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG > 1:4546586/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG > 1:36517760/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG > 1:30792829/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG > 1:30041074/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG > 1:25540822/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG < 1:27730043/68‑1 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG > 1:12922592/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC < 1:31806903/67‑1 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:25749972/1‑67 GCTGCTTTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:22380111/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGTATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:9219021/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGt > 1:7392715/1‑67 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:12368865/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:19605043/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:3905405/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:39070389/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:18712068/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:12878511/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:1024096/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:12329543/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:12253805/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:11526675/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:32389074/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:29327795/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:32398934/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:31618981/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:30822356/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:35963490/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:21005886/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:26109868/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:37385608/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:21416178/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCAATGCCGGACCCCCGGAAAACGA > 1:23431775/1‑68 CTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:6781621/1‑67 CTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:8613018/1‑67 TGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAAC > 1:37252784/1‑68 TGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAAC < 1:29473168/68‑1 TGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAAC < 1:23335193/68‑1 GCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAACG < 1:1613967/68‑1 GCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAACG < 1:32128915/68‑1 GCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/232080‑232154‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgatgctgcATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAACG < CP009273/232160‑232095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |