| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 232154 | 282 (0.590) | 21 (0.050) | 6/92 | NT | 8.0% | coding (336/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids |
| ? | CP009273 | = 232160 | 252 (0.650) | coding (330/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids | |||||
Only 100 of 604 total aligned reads displayed.
CATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTC > CP009273/232087‑232220 | atcaCAGCGTTCGTTTTGCGGGTGTCGGGCATGGCCTTTATCCCATTCGCATTTGATTTGATGCTGcc < 1:7901703/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:6577338/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:11822874/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:27781040/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:23951693/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:23640579/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:18678141/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:14296607/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:14532651/68‑1 (MQ=255) tcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc > 1:25556731/1‑67 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:10406768/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:35636778/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:34513993/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:20010266/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:18491386/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:12699789/1‑68 (MQ=255) aGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCatt > 1:2266933/1‑66 (MQ=255) gttcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAt < 1:1162576/65‑1 (MQ=255) gttcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAt < 1:4052589/65‑1 (MQ=255) gttcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAt < 1:16804568/65‑1 (MQ=255) gttcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgca < 1:23335193‑M2/68‑4 (MQ=255) gttcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgca > 1:37252784‑M2/1‑65 (MQ=255) tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:35963490‑M2/1‑63 (MQ=255) tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:12329543‑M2/1‑63 (MQ=255) tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:12878511‑M2/1‑63 (MQ=255) tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:32239894‑M2/1‑63 (MQ=255) tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:3905405‑M2/1‑63 (MQ=255) tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:19763731‑M2/1‑63 (MQ=255) tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:37617348‑M2/1‑63 (MQ=255) tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:38599602‑M2/1‑63 (MQ=255) cgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagca > 1:30041074‑M2/1‑62 (MQ=255) gttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagcat > 1:9413802‑M2/1‑61 (MQ=255) gttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagca > 1:25749972‑M2/1‑61 (MQ=255) ttttCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagcatc < 1:36590787‑M2/68‑9 (MQ=255) ttttCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagcatc < 1:25281800‑M2/68‑9 (MQ=255) ttCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagcatcaa < 1:7226972‑M2/68‑11 (MQ=255) ccGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGa < 1:37834107/68‑1 (MQ=255) ggTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGt > 1:22111774/1‑68 (MQ=255) ggTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGt > 1:36384956/1‑68 (MQ=255) ggTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGt > 1:17729150/1‑68 (MQ=255) ggTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGt > 1:24963604/1‑68 (MQ=255) tgtCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGtt > 1:33993712/1‑67 (MQ=255) gtCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTg < 1:2433774/67‑1 (MQ=255) gtCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGc < 1:513671/68‑1 (MQ=255) ggCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCaga > 1:27502421/1‑68 (MQ=255) gCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCagag > 1:31471687/1‑68 (MQ=255) aTGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAgaga > 1:34770198/1‑67 (MQ=255) aTGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAgaga < 1:24580483/67‑1 (MQ=255) aTGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAAgcagcatcaaatcaaatgggaatgg > 1:18932673‑M2/1‑43 (MQ=255) aTGCCCTTAAACCCATTCCCATTTGATCTGATGCTCCCCCAATgcagcatcaaatcaaatgggaatgg > 1:38101808‑M2/1‑43 (MQ=255) ccTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGAc > 1:14824219/1‑68 (MQ=255) aaCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAtttt < 1:601161/68‑1 (MQ=255) aaCCCATTCCCATTTGACTTGATGCTGCCCCAATGCATCATCAAGACGTTGCCAGAGATCGACAtttt < 1:26805196/68‑1 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCattggggcagcatcaaatcaaatgggaatgggttaaaggcc > 1:32027550‑M1/1‑27 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGCTCGACAttttt > 1:8310663/1‑68 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttttt > 1:13074731/1‑68 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttttt > 1:16510060/1‑68 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttttt > 1:13709129/1‑68 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttttt > 1:8636614/1‑68 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttttt > 1:30239437/1‑68 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttttt > 1:28420463/1‑68 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttttt > 1:12102831/1‑68 (MQ=255) cccattcccattTGATTTGATGCTGCattggggcagcatcaaatcaaatgggtttgggttaaaggcca > 1:4927801‑M1/1‑26 (MQ=255) cccattcccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAtttttt > 1:6981565/1‑68 (MQ=255) cccattcccattTGATTTGATGCTGCATTGGGGCAGCATCAAGACGTTGCCAGAGATCGACAtttttt > 1:8884249/1‑68 (MQ=21) ccattcccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAtttttt > 1:17268707/1‑67 (MQ=255) ccattcccattTGATTTGATGCTGCCCAAATGCAGCATCAAGACGTTGCCAGAGATCGACAtttttt > 1:33757391/1‑67 (MQ=255) tcccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTgg < 1:15658859/68‑1 (MQ=255) cccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGt > 1:1072268/1‑68 (MQ=255) ccattTGATTTGATGCTGCattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccgg > 1:23176874‑M1/1‑19 (MQ=255) ccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGtt > 1:30560088/1‑68 (MQ=255) ccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGtt > 1:33086428/1‑68 (MQ=255) tttgatttgaTGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGttttt > 1:11335082/1‑68 (MQ=255) tttgatttgaTGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGttttt > 1:35220178/1‑68 (MQ=255) tttgatttgaTGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGttttt > 1:18272763/1‑68 (MQ=255) ttgatttgatGCTGCattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacac > 1:5825093‑M1/1‑15 (MQ=255) ttgatttgatGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGtttttt > 1:31804043/1‑68 (MQ=255) ttgatttgatGATGCCCCAATGCAGCATCAAGACGTTGCCAGATATCGACATTTTTTACTGGtttttt > 1:13319783/1‑68 (MQ=255) tttgatGCTGCattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccgga > 1:21141591‑M1/1‑11 (MQ=255) tttgatGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTg > 1:7536999/1‑65 (MQ=255) ttgatGCTGCaatggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaa < 1:20848079‑M1/68‑59 (MQ=255) gatGCTGCattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaa < 1:20325071‑M1/68‑61 (MQ=255) atGCTGCattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaac > 1:9692893‑M1/1‑7 (MQ=255) atGCTGCattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaac > 1:4586705‑M1/1‑7 (MQ=255) tgctgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacg > 1:26224539‑M1/1‑6 (MQ=255) tgctgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacg > 1:28915058‑M1/1‑6 (MQ=255) tgctgcCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGt > 1:9250902/1‑68 (MQ=255) gctgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacga > 1:21416178‑M1/1‑5 (MQ=255) gctgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacga > 1:30822356‑M1/1‑5 (MQ=255) gctgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacga > 1:19605043‑M1/1‑5 (MQ=255) gctgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacga > 1:1024096‑M1/1‑5 (MQ=255) gctgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacga > 1:37062572‑M1/1‑5 (MQ=255) gctgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacga > 1:32398934‑M1/1‑5 (MQ=255) gctgcCCCAATGCAGCATCAAGACGTTGCCAGAGATCGCGATTTTTTACTGGTATTTTGTCTGCGGtt > 1:26680098/1‑68 (MQ=255) gctgcCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGtt > 1:29254959/1‑68 (MQ=255) gctgcCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGtt < 1:1922831/68‑1 (MQ=255) gctgcCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGtt > 1:32558770/1‑68 (MQ=255) gctgcCCCAATGCAGCATAAAGACGTTGCCAGAGATAGACATTTTTTACTGGTTTTTTGTCTGCGGtt > 1:31159451/1‑68 (MQ=255) tgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacgaac < 1:29473168‑M1/68‑66 (MQ=255) gcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacgaacg < 1:1613967‑M1/68‑67 (MQ=255) | CATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTC > CP009273/232087‑232220 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |