New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 442683373 (0.790)42 (0.110) 15/90 NT 10.4% coding (479/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 = 442722 422 (1.110)coding (440/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 177 total aligned reads displayed.

TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/442606‑442683
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgcgccgcCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  <  CP009273/442722‑442657
                                                                                                                                                
TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              <  1:15725244/68‑1
TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCGGAAGATAGCCAGCAGGATC                                                                              <  1:5228660/68‑1
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           <  1:5729486/68‑1
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:10279123/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:20771442/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:39482777/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:12116193/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:2518393/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:30850700/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCGGCCACAGGCTGAAGAGAGCCAGCAGGATCGCT                                                                           <  1:4168326/68‑1
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCTACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:23565655/1‑67
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCGCAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:8363239/1‑67
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:7921973/1‑67
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:35092614/1‑67
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:19053907/1‑67
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:4716984/1‑67
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:6582243/1‑67
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:1227839/1‑67
      GGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGC                                                                         <  1:1666367/67‑1
      GGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGC                                                                         <  1:1005050/67‑1
         AAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCC                                                                      <  1:35984044/67‑1
          AATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGC                                                                    <  1:34202514/68‑1
                      ATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGC                                                         <  1:36428209/67‑1
                          GAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGGGCTCGGgt                                                        >  1:36182237/1‑62
                           AGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGT                                                   >  1:12925037/1‑68
                           AGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGT                                                   >  1:11648855/1‑68
                                GGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGT                                              >  1:7707020/1‑68
                                GGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGT                                              >  1:20789443/1‑68
                                       GCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGT                                       >  1:39613831/1‑68
                                          ACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAG                                    >  1:34677382/1‑68
                                          ACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAG                                    >  1:1318128/1‑68
                                          ACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAG                                    >  1:29046156/1‑68
                                          ACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGGGATCGGCGGCTGGGCGGGAACGGGTGAG                                    >  1:20904427/1‑68
                                            AGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGT                                   >  1:37217006/1‑67
                                            AGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGT                                   >  1:23683474/1‑67
                                            AGGCTGAAGATAGCCAGCAGGATAGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGT                                   >  1:32915843/1‑67
                                              GCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTTACCGGTGAGTTag                                >  1:8416750/1‑66
                                              GCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGTGTTCG                                >  1:20043010/1‑68
                                              GCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACGGTGCGGTAACCGGTGAGTTCG                                >  1:10813494/1‑68
                                                   AGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGC                           >  1:9569354/1‑68
                                                   AGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCGACTGTGCGGTAACCGGTGAGTTCGATAGC                           >  1:8207233/1‑68
                                                    GATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGGTACTGTGCGGTAACCGGTGAGTTCGATAGCG                          >  1:26000611/1‑68
                                                    GATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG                          >  1:4458538/1‑68
                                                    GATAGCCAGCAGGATCGCTGCGCCGCCGGGGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG                          >  1:22858659/1‑68
                                                     ATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG                          >  1:9194177/1‑67
                                                     ATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG                          >  1:8641692/1‑67
                                                         CCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCA                     >  1:10664585/1‑68
                                                              AGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGcc                >  1:28733654/1‑66
                                                                 ATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGAT                >  1:32639066/1‑65
                                                                   CGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTG            <  1:14755008/67‑1
                                                                   CGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:28245688/1‑66
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGCTCCT             >  1:3281497/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCT          <  1:27273665/68‑1
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:6249475/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:17930688/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:15874653/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:38122804/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:15310563/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:26253584/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:22056667/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:29758417/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:14002121/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:298669/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:24679086/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:30813912/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:33435349/1‑65
                                                                      TGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGG        <  1:21794783/68‑1
                                                                      TGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTG         >  1:8270897/1‑67
                                                                      TGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTG         >  1:4543451/1‑67
                                                                      TGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTG         >  1:32250803/1‑67
                                                                      TGCGCCGCCGGGGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTG         >  1:26892872/1‑67
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:15209230/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:29259755/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:11069078/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGGGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:11056397/68‑1
                                                                        CGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:12227653/67‑1
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:37366037/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:30448839/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:18887511/1‑68
                                                                           CGCGGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTAT    <  1:38356892/67‑1
                                                                           CGCCGGTGATCGGCTACTGTGCTGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:21591484/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:13694085/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:26384290/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:27548444/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:27665722/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:28807310/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:29094863/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:30271956/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:24962749/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:7858327/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:39445774/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:23684216/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:34995388/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:5744396/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:35273568/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:20680821/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:36749524/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:2008955/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTAT    <  1:38656670/67‑1
                                                                            GCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  <  1:33726033/68‑1
                                                                                                                                                
TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/442606‑442683
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgcgccgcCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  <  CP009273/442722‑442657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.