| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 831686 | NA (NA) | 6 (0.020) | 3/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 148 total aligned reads displayed.
ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/831610‑831686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatgaCATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG < CP009273/831692‑831626 ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA < 1:23849844/68‑1ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA < 1:2650488/68‑1 CGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA > 1:17602112/1‑67 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:10714370/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:36211589/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:16980528/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:18103126/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:18562847/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:31336153/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:20596695/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:7426442/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:11505396/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:11539549/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:33444802/1‑68 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:37861752/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:31663322/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:23456231/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:1529174/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:1376533/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:38716186/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:33728921/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:12507719/67‑1 AAGCGGCAACTATCCGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:9087141/67‑1 AGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATG > 1:34183996/1‑68 AGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATG > 1:39138924/1‑68 GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:32351790/1‑68 GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:20033147/1‑68 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATca > 1:28952607/1‑65 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:30631778/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:27401425/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:10708972/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:38503607/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:37853224/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCATTTCTCAGCCGGATGA > 1:7397570/1‑67 CGGCAACTATCAGCGACGGCCACGCCCGCGTTAATCAGGCATTTTAATTCTGTTCTCAGCCCGATca > 1:29145173/1‑65 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:3721771/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:33224008/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:16656910/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:6472003/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:11825427/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:27091450/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:38347600/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:35995525/66‑1 ATCAGGCATTTTAATTCTTTTCTCAGCCGGATGACATGGGTGTGCCGGGTGAGAAAAGAATTATAAT > 1:4713490/1‑67 ATCAGGCATTTTAATTCTTTTCTCAGCCGGATGACATGGCTCGTCCGGCTGAGAAAAGTTTTAAAct > 1:36866685/1‑65 CAGGCATTTTAATTCTTTTCTCAGCCGGATGACATGGCTCATCCGGCGGTGATAAGATTTAAAATGCC > 1:2567704/1‑68 AGCCGGATGACATGTCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:21702510/68‑1 AGCCGGATGACATGGCTCCTCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:31062378/1‑67 AGCCGGATGACATGGCTCATCCGGCTTAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:29673180/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:33704131/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:12807752/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:18433494/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:21968601/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:23497997/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:12256080/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:21163336/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:256247/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:35208388/1‑67 AGCCGGATGACATGGCTCATCCAGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:32870976/68‑1 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:16304400/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:13459619/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:37270914/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:152858/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:32596950/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:31815252/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:7103169/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:28194193/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:7998728/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:25312736/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:8656022/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:24270353/1‑68 CCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:18208488/1‑67 CCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:16530858/1‑67 CCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:31901675/1‑67 CCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:13977703/1‑67 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:4478363/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:23296305/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:9442699/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:29771067/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:19359188/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:34496816/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:23101540/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:7977217/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:523035/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:34429040/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:9367820/67‑1 ATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA > 1:32504184/1‑68 ATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA > 1:20598611/1‑68 ATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA > 1:2095523/1‑68 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGAT < 1:10868609/68‑1 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGAT > 1:19385768/1‑68 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA < 1:3487079/67‑1 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA < 1:26691997/67‑1 GACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCCGGCCGTCGCTGATA > 1:3834309/1‑68 GACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATA < 1:25301889/68‑1 GACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATA < 1:5620924/68‑1 GACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATA < 1:35717913/68‑1 GACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATA > 1:14122166/1‑68 ACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG > 1:15996221/1‑68 ACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG > 1:39037229/1‑68 ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/831610‑831686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatgaCATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG < CP009273/831692‑831626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |