| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 831686 | NA (NA) | 6 (0.020) | 3/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 474 total aligned reads displayed.
GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACG > CP009273/831619‑831752 | gCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:20033147‑M1/1‑68 (MQ=255) cGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:32132375‑M1/1‑67 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:17649305/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:19114773/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:22768538/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGc < 1:11874545/68‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGc < 1:31145609/68‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:38366150‑M1/66‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:35995525‑M1/66‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:34490182‑M1/66‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:33224008‑M1/66‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:27091450‑M1/66‑1 (MQ=255) aaCTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCAt < 1:20765559/68‑1 (MQ=255) tCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcat > 1:20598611‑M2/1‑64 (MQ=255) gCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:31704334‑M2/68‑8 (MQ=255) gCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:19359188‑M2/68‑8 (MQ=255) gCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTATTTTCTCAGACGGATGAGCCATGtcatccg < 1:36527387‑M2/68‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:9821034‑M2/67‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:32576124‑M2/67‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:523035‑M2/67‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:1635005‑M2/67‑8 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:24270353‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:1873021‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:23681843‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:7103169‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:7998728‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:152858‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:13459619‑M2/1‑59 (MQ=255) aCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct < 1:3409337‑M2/68‑11 (MQ=255) aCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTAAGCCGGATGAGCCATGtcatccggct < 1:29673180‑M2/68‑11 (MQ=255) cGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtt < 1:18060995/68‑1 (MQ=255) cGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtt < 1:18521399/68‑1 (MQ=255) gCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtttt > 1:26248232/1‑68 (MQ=255) tGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcc < 1:1279700/68‑1 (MQ=255) tGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcc < 1:9346902/68‑1 (MQ=255) cgcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcccc > 1:13095444/1‑67 (MQ=255) gcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCa > 1:21915139/1‑67 (MQ=255) gcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCa > 1:25856402/1‑67 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:15969186/67‑1 (MQ=255) gTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCa < 1:305314/68‑1 (MQ=255) gTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCa > 1:27372805/1‑68 (MQ=255) gTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCa < 1:16238181/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGTATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:4789240/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCaa < 1:38991260/67‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:11742009/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:8520122/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:29162815/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:4501660/68‑1 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAcagggcgcatccggcggcgacaagaattaaaat > 1:5840308‑M1/1‑34 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat < 1:5566188/68‑1 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:14771456/1‑68 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:36877827/1‑68 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:2792090/1‑68 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:39201024/1‑68 (MQ=255) atgCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAACCCACCGCAATATGaa < 1:38131255/66‑1 (MQ=255) ggCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGaaa > 1:30935292/1‑68 (MQ=255) ggCATTTTAAATCTTATCACCGCCGGATGAGCCATGtcatccggctgagaaaagaattaaaatgcctg > 1:2567704‑M2/1‑36 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCCCCGCAATATGAAAt > 1:21220979/1‑67 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAt > 1:16571912/1‑67 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAt < 1:15437968/67‑1 (MQ=255) aTTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAtt > 1:25509277/1‑67 (MQ=255) tAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGc > 1:38625448/1‑68 (MQ=255) tAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGc > 1:15145771/1‑68 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAata > 1:18314102/1‑52 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:28843484/1‑68 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:7703454/1‑68 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:36673730/1‑68 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:16874950/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:20339598/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:23352790/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:29982450/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:13884843/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:10252476/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:24502422/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:32301285/68‑1 (MQ=255) tcttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:12339543/66‑1 (MQ=255) aGCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgt < 1:33704131‑M1/68‑59 (MQ=255) aGCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgt < 1:21163336‑M1/68‑59 (MQ=255) aGCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgt < 1:12993771‑M1/68‑59 (MQ=255) aGCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccg > 1:35208388‑M1/1‑10 (MQ=255) aGCCGGATGAcatggctcatccagctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgt < 1:32870976‑M1/68‑59 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:8656022‑M1/1‑9 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:28194193‑M1/1‑9 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:25312736‑M1/1‑9 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccacgccgtc > 1:37643622‑M1/1‑9 (MQ=255) gCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCt > 1:35697072/1‑68 (MQ=255) ccGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:31901675‑M1/1‑8 (MQ=255) cGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcgc < 1:9442699‑M1/68‑62 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGAcc < 1:2471028/65‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:23112850/68‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:12111163/68‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:11111511/68‑1 (MQ=255) ggATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTcc < 1:6760040/68‑1 (MQ=255) ggATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTcc < 1:2230343/68‑1 (MQ=255) aTGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcgctga > 1:32504184‑M1/1‑4 (MQ=255) aTGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTccc > 1:37219175/1‑67 (MQ=255) tGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcgctga < 1:26691997‑M1/67‑65 (MQ=255) tGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcgctga < 1:3487079‑M1/67‑65 (MQ=255) gAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcgctgata > 1:14122166‑M1/1‑2 (MQ=255) gAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCAc > 1:10713376/1‑67 (MQ=255) | GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACG > CP009273/831619‑831752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |