| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 964816 = | 139 (0.290) | 19 (0.050) | 7/94 | NT | 13.3% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain |
| ? | CP009273 | 964858 = | 132 (0.330) | coding (14/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
TGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/964888‑964816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgcACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC > CP009273/964858‑964922 TGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACG < 1:4052456/66‑1 GAAGATTACGCGCATCAGCAAGGGTGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:3757309/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:9304913/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:37415647/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:8340683/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:17987609/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:5753210/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:22667722/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT > 1:38396337/1‑67 AGATTACGCGCATCAGCAAGGGAGAGGTGCAGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC < 1:36241196/68‑1 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGCCTCCATCAATCGAACGCTGCCGC > 1:38373808/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:3164357/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:33995007/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:26881511/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:25000027/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:23198233/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:39217715/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:7526667/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:17588386/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:11167404/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:9037565/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCCGCCGC > 1:15919872/1‑68 TTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCA < 1:38357299/68‑1 TTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCAATCAATCGAACGCTGCCGCA < 1:12112399/68‑1 TACGCGCAGCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGAATCCATCAATCGAACGCTGCCGagg < 1:38291403/68‑4 ACGCGCATCAGCATGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACC < 1:17825724/68‑1 ATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCC < 1:38957694/67‑1 ATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAAGCGAACGCTGCCGCACCTCTCC < 1:38789077/67‑1 CAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTT < 1:28228167/68‑1 CAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTT < 1:18618753/68‑1 CAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTT < 1:18622179/68‑1 CAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTT < 1:24895649/68‑1 CAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTT < 1:21164226/68‑1 acCAAGGGAGAGGCGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTT < 1:17623922/65‑1 cCAAGGGAGAGGGGCGGCAGCCACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCGCCCTTGC < 1:39060270/67‑1 acGGGAGGGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGC < 1:4953423/64‑1 AAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGC < 1:20966993/66‑1 AAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGC < 1:24010632/66‑1 GAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCG < 1:29269763/67‑1 GGTGCGGCAGCGACATTCATCACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGC < 1:20011852/66‑1 TGCGGCAGCCACATTCATGACTCCATCAATCGACCGCTGCCGCACCTCTCCCTTGCTGATGCG < 1:38704406/63‑1 GCGGCAGCGACATTCATGACACCATCAATCCAACGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAT < 1:2880257/68‑1 CGGCAGCTACATTCATGACTCCACCAATCCAACGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAT < 1:10169472/67‑1 CGGCAGCGACATTCATCACCCCATCAATCCACCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAT < 1:10797503/67‑1 ATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCA < 1:10262059/68‑1 GCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAAC < 1:30487406/68‑1 GCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAAC < 1:15880157/68‑1 GCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCC < 1:21306057/68‑1 GCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCC < 1:24947513/68‑1 CGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC < 1:38202733/68‑1 CGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC < 1:27441148/68‑1 TGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/964888‑964816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgcACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC > CP009273/964858‑964922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |