| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 231 (0.490) | 27 (0.060) +G |
14/110 | NT | 10.9% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 218 (0.460) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1161518‑1161581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGC > CP009273/1162078‑1162129 | TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCG > 1:2027356/1‑68 AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGG > 1:20569316/1‑68 TTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGTCGGGTGTA > 1:32614183/1‑68 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGA > 1:39452789/1‑66 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCTGCGGGTGTAGA > 1:36570832/1‑66 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGGCGGGTGTAGAAa > 1:21618370/1‑67 GGGGTCACGTTGCCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTCTAGAA > 1:3626068/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAat > 1:30118055/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAC > 1:15307846/1‑67 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCTACGGGTGTTGAAa > 1:7841574/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGCCGGGTGTAGAAa > 1:2286871/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGAATGTGATTGTCGGCGGCGGGGCTGCGGGGGTCGAAat > 1:16448511/1‑66 CACGTTGTCTACGCCATTCAAAAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCC < 1:7538854/67‑1 TTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCAGA > 1:14689702/1‑68 TGACTACGCGATTCAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGA < 1:23758784/67‑1 TGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGA < 1:29101030/67‑1 TGACTACGCCAATGCACAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGA < 1:23895298/67‑1 ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAtgt > 1:14630573/1‑65 CTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGCCGGGT > 1:20834317/1‑47 CTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTGGAA > 1:26284481/1‑53 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAATCTCCGCTGATTTGCt > 1:21574942/1‑64 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAATCGCCGCTGAATTGCGCAA > 1:1753654/1‑68 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGTCGGGTGTAGAACTGTCCGCTGAATTGCACct > 1:26842052/1‑66 ATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGCCGGGTGTAGAAATATCCCCTGAATTGCGCAAC > 1:22769158/1‑67 AAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGTGTAGAACTCTCCGCTGAAGTGCACAACGCGGT > 1:933871/1‑67 AGATTGTGATTGTCGGCGGCGGGGCGGCGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAA > 1:11638360/1‑67 TGTGATTGTCGGCGGCGGGGCGGCGGGTCTAGAACTCTCCGCTGAAGTGCGCAACGCGGTCGAGCt > 1:16332385/1‑65 ATTGTCGGCGGCGGGGCGCCGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGCTCAAGCAAATGC > 1:9325514/1‑67 | TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1161518‑1161581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGC > CP009273/1162078‑1162129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |