New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1161581231 (0.490)27 (0.060)
+G		 14/110 NT 10.9% coding (41/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase
?CP009273 1162078 = 218 (0.460)coding (538/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase

Only 100 of 272 total aligned reads displayed.

GTTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACA  >  CP009273/1162011‑1162144
                                                                   |                                                                  
gTTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGgcggcggcg                                                                    <  1:23694007/68‑1 (MQ=255)
 ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGgcgc                                                                   >  1:31094010/1‑68 (MQ=255)
       aaatttaagggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcgggGCGCCggg                                                             >  1:20569316‑M2/61‑68 (MQ=255)
        aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                            <  1:18994280/68‑1 (MQ=255)
        aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                            <  1:36648470/68‑1 (MQ=255)
        aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                            <  1:3761924/68‑1 (MQ=255)
        aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                            <  1:23173162/68‑1 (MQ=255)
        aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt                                                            <  1:474695/68‑1 (MQ=255)
          tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGCCGGgtgt                                                          >  1:14613343/1‑68 (MQ=255)
          tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                          >  1:105053/1‑68 (MQ=255)
          tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                          >  1:17481631/1‑68 (MQ=255)
          tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                          >  1:2973387/1‑68 (MQ=255)
          tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                          >  1:6765873/1‑68 (MQ=255)
          tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                          >  1:25419083/1‑68 (MQ=255)
          tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                          <  1:25976185/68‑1 (MQ=255)
          tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                          >  1:10979678/1‑68 (MQ=255)
          tACTCCGCCAACATGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt                                                          >  1:1246259/1‑68 (MQ=255)
           aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa                                                         >  1:23364900/1‑68 (MQ=255)
           aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa                                                         >  1:38274599/1‑68 (MQ=255)
           aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa                                                         >  1:35603097/1‑68 (MQ=255)
             tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa                                                       >  1:27845010/1‑68 (MQ=255)
             tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa                                                       >  1:30347205/1‑68 (MQ=255)
             tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa                                                       >  1:26842545/1‑68 (MQ=255)
             tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGAGACGGGTGTAGa                                                       >  1:26797328/1‑68 (MQ=255)
               cGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc                                                     <  1:18642414/68‑1 (MQ=255)
               cGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc                                                     <  1:30580163/68‑1 (MQ=255)
                ggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcgggGCGACGGGTGTagaaat                                                    >  1:30118055‑M2/52‑66 (MQ=255)
                ggggtcacgttgactacgccattgaaaaagaatgtgattgtcggcggcgggGCTGCGGGGGTcgaaat                                                    >  1:16448511‑M2/52‑66 (MQ=255)
                gCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc                                                     >  1:20918466/1‑67 (MQ=255)
                    aCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc                                                <  1:32521452/68‑1 (MQ=255)
                    aCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc                                                <  1:15287835/68‑1 (MQ=255)
                    aCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc                                                <  1:37834177/68‑1 (MQ=255)
                     ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc                                                >  1:19276385/1‑67 (MQ=255)
                     ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc                                                >  1:26320234/1‑67 (MQ=255)
                     ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc                                                >  1:14091072/1‑67 (MQ=255)
                     ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc                                                >  1:39249077/1‑67 (MQ=255)
                     ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc                                                >  1:32937241/1‑67 (MQ=255)
                     ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGACGGCGGCGGCGCGACGGGTGTAGAACTCTcc                                                >  1:14178177/1‑67 (MQ=255)
                     cacgttgtctacgccattcaaaaacattgcgattgtcggcggcggcGCGACGGGTGTAGAACTCTcc                                                <  1:7538854‑M2/21‑1 (MQ=255)
                       tGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc                                                >  1:17682749/1‑65 (MQ=255)
                       tGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGcg                                             >  1:9003149/1‑67 (MQ=255)
                          gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGaa                                          >  1:3551436/1‑68 (MQ=255)
                          gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa                                           <  1:3680759/67‑1 (MQ=255)
                          gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa                                           <  1:31284811/67‑1 (MQ=255)
                          gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa                                           <  1:32309178/67‑1 (MQ=255)
                          gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa                                           <  1:5408592/67‑1 (MQ=255)
                          gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa                                           <  1:25229790/67‑1 (MQ=255)
                          gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa                                           <  1:783405/67‑1 (MQ=255)
                           cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt                                         >  1:29509537/1‑68 (MQ=255)
                           cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt                                         >  1:9785695/1‑68 (MQ=255)
                           cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt                                         >  1:25762223/1‑68 (MQ=255)
                           cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt                                         >  1:1624511/1‑68 (MQ=255)
                            gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAtt                                        >  1:22797316/1‑68 (MQ=255)
                              gAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGc                                      <  1:13209627/68‑1 (MQ=255)
                              gAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGAAGAACTCTCCGCTGAATTGc                                      <  1:29096966/68‑1 (MQ=255)
                                  ccattgaaaaagattgtgattgtcggcggcgggGCGACGGGTGTAGAAATCTCCGCTGATTTgct                                     >  1:21574942‑M2/34‑64 (MQ=255)
                                   gCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAAc                                 >  1:28655276/1‑68 (MQ=255)
                                     aaaGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAAcgc                               >  1:7008702/1‑68 (MQ=255)
                                         tGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc                           >  1:16874979/1‑68 (MQ=255)
                                         aaaagattgtgattgtcggcggcgggGCGCCGGGTGTAGAACTCTCCGCTGAAGTGCACAACGCGGt                            >  1:933871‑M2/27‑67 (MQ=255)
                                          gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc                           <  1:36557799/67‑1 (MQ=255)
                                          gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc                           <  1:37350909/67‑1 (MQ=255)
                                           aaCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGCTCaa                         >  1:21174878/1‑68 (MQ=255)
                                            aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa                         >  1:4817135/1‑67 (MQ=255)
                                            aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa                         >  1:8944038/1‑67 (MQ=255)
                                            aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGAGGTAAAg                        >  1:388905/1‑68 (MQ=255)
                                              aTTGTGATTGTCGGCGGCGGCGCGCGGGGTGTAGAACTCTCCGCTGACTTGCGCCAGGCGGTCAGGc                       >  1:6544150/1‑67 (MQ=21)
                                              aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa                      <  1:20337697/68‑1 (MQ=255)
                                              aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa                      <  1:33557196/68‑1 (MQ=255)
                                               ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa                      >  1:4232585/1‑67 (MQ=255)
                                                 gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACt                   <  1:14382117/68‑1 (MQ=255)
                                                    aTTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc                 >  1:36022879/1‑67 (MQ=255)
                                                     ttGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGca                <  1:12830782/67‑1 (MQ=255)
                                                      tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCCCAACGCGGTCAAGCAACTGcaca              >  1:18815375/1‑68 (MQ=255)
                                                      tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca              >  1:10578282/1‑68 (MQ=255)
                                                      tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca              >  1:11515629/1‑68 (MQ=255)
                                                      tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca              >  1:34237458/1‑68 (MQ=255)
                                                       gTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAg             <  1:17092257/68‑1 (MQ=255)
                                                         cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc            <  1:17809248/67‑1 (MQ=255)
                                                         cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc            <  1:38646171/67‑1 (MQ=255)
                                                         cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc            <  1:24459397/67‑1 (MQ=255)
                                                         cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc            <  1:13573513/67‑1 (MQ=255)
                                                         cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc            <  1:7263938/67‑1 (MQ=255)
                                                         cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc            <  1:21704798/67‑1 (MQ=255)
                                                          ggcggcggcGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTa          <  1:32083449/68‑1 (MQ=255)
                                                           gcggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTAc         >  1:14698804/1‑68 (MQ=255)
                                                             ggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg        <  1:5797117/67‑1 (MQ=255)
                                                             ggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg        <  1:28249118/67‑1 (MQ=255)
                                                             ggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg        <  1:23565316/67‑1 (MQ=255)
                                                             ggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg        <  1:11771511/67‑1 (MQ=255)
                                                             ggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg        <  1:30013354/67‑1 (MQ=255)
                                                             ggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg        <  1:15488959/67‑1 (MQ=255)
                                                              gcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt      >  1:19902012/1‑68 (MQ=255)
                                                               aggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt      <  1:9096632/66‑1 (MQ=255)
                                                                ggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt     <  1:32615000/67‑1 (MQ=255)
                                                                ggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt     <  1:33170166/67‑1 (MQ=255)
                                                                ggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt     <  1:1123982/67‑1 (MQ=255)
                                                                  cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc   <  1:22472356/67‑1 (MQ=255)
                                                                  cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc   <  1:24661403/67‑1 (MQ=255)
                                                                  cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACa  >  1:16287728/1‑68 (MQ=255)
                                                                   |                                                                  
GTTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACA  >  CP009273/1162011‑1162144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.