| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1793039 | 192 (0.400) | 9 (0.020) | 5/96 | NT | 5.2% | coding (161/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit |
| ? | CP009273 | = 1793052 | 163 (0.400) | coding (148/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit | |||||
Only 100 of 110 total aligned reads displayed.
CCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1792965‑1793039‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctgccgCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGCGCTGA < CP009273/1793052‑1792986 CCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:16600606/1‑68CCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:26182981/1‑68CCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:32056575/1‑68CCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:11767514/1‑68CCAGATCCGCTTTACGCGCATTCAGCGCCTGCTGACCCTGCTCTTTCGCTTCGTTGATACCCGCACCA > 1:23724887/1‑68 AGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:18215911/1‑66 AGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:16141298/1‑66 AGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:35991703/1‑66 AGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:18793534/1‑66 AGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:11137209/1‑66 AGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:5351186/1‑66 AGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:33127826/1‑66 GTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:6759431/1‑65 GTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:14202716/1‑65 GTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:17393039/1‑65 GTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCA > 1:17308236/1‑65 TCCGCTTTACGCGCATTCAGCGCCTGCTGCACCTGCTCTTGCGCTTCGTTGATACCCGCCCCCGCTG > 1:17262266/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGTTAACCGCACCAGCTG > 1:17418613/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGC < 1:4181365/68‑1 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGC < 1:449045/68‑1 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:5083747/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:23000989/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:35753583/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:25872741/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:27940769/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:28102704/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:29301140/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:29539344/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:2997551/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:30712633/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:38306882/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:36734924/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:36734903/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:32663189/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:11494896/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:21354613/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:13393456/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:14959989/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:7167245/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:12461067/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:16513936/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:16567406/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG < 1:10608635/67‑1 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:10581271/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:35123333/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:19387705/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:20856361/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTG > 1:20975355/1‑67 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCT < 1:5676668/66‑1 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGC < 1:29056337/65‑1 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGC < 1:3015169/65‑1 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGC < 1:694363/65‑1 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGC < 1:15355211/65‑1 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGC < 1:27022458/65‑1 TCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGC < 1:39439061/65‑1 CCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCC < 1:6765505/68‑1 CGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCG > 1:32939779/1‑68 CTGCTCTTTCGCTTCGTTGATAACCGCACCGGCTGCCGCCAGAAGAGCGTGCGGCAGCGGGTGCGGTT > 1:17346084/1‑68 CTGCTCTTTCGCTTCGTTGATAACCGCACCCGCTGCCGCCAGAAGAGCGGCCGGCAGCTGGTGCGGTT > 1:320290/1‑68 CGCTTCGTTGATAACCGCACCAGCTGCCGCCAGCAGCGCGTCCGGCTGCGGGTGCGGTTATCAACGAA > 1:3034757/1‑68 CGCTTCGTTGATAACCGCACCAGCTGCCGCCAGAAGCGCGTCCGGCAGCTGGTGCGGTTATCAACGAA > 1:39409874/1‑68 TTCGTTGATAACCGCACCAGCTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCG > 1:39272295/1‑68 ACCGCACCAGCTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGGGGTTATCAACGAAGCGAAAGAGCAGG > 1:32743678/1‑68 ACCGCACCAGCTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGACGCGAATGAGCAGG > 1:28311450/1‑68 ACCGCACCAGCTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGG > 1:31712707/1‑68 CCGCACCAGCTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGT > 1:26578814/1‑68 ACCAGCTGCCGCGAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCA > 1:4883569/1‑67 AGCTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAG > 1:38095571/1‑68 ggTGCCGCCAGAAGAGCGTCGGGCAGCTTGTGCGGTTATCAAAGAAGCGAAAGAGCAGGTTCAGCAGG < 1:15889761/66‑1 GCTTCCGCCAGAAGAGCGTCCGGCAGCGGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGG < 1:8344077/68‑1 GCTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAG > 1:10259089/1‑67 GCTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAG > 1:8435886/1‑67 GCTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAG > 1:17517353/1‑67 GCTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAG > 1:22840899/1‑67 CTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGACAGAGCAGGTTCAGCAGGC > 1:33350105/1‑68 CTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCCGCAGGC > 1:38656631/1‑68 CTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGC > 1:8256377/1‑68 CTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGC > 1:35610616/1‑68 CTGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGC > 1:19307150/1‑68 gGCCGCCAGAAGAGCGGCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGCG < 1:22847615/67‑1 TGCCGCCAGAAGAGCGTCCGGCAGGTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGG < 1:23448126/66‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGCG < 1:32221313/68‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGCG < 1:10552121/68‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGCG < 1:12589287/68‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGCG < 1:32631808/68‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGCG < 1:21659809/68‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGC > 1:32396764/1‑67 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGC > 1:30845124/1‑67 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGG < 1:9139437/66‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGG < 1:8727807/66‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGG < 1:13466704/66‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGG < 1:6480933/66‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGG < 1:19867621/66‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGG < 1:20501044/66‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGG < 1:22903198/66‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGG < 1:24555786/66‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGG < 1:30807111/66‑1 TGCCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGG < 1:37120694/66‑1 CCGCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGC > 1:37960226/1‑65 GCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGCGCTGA < 1:10011884/68‑1 CCAGTTCCGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1792965‑1793039‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctgccgCCAGAAGAGCGTCCGGCAGCTGGTGCGGTTATCAACGAAGCGAAAGAGCAGGTTCAGCAGGCGCTGA < CP009273/1793052‑1792986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |