| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1793039 | 192 (0.400) | 9 (0.020) | 5/96 | NT | 5.2% | coding (161/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit |
| ? | CP009273 | = 1793052 | 163 (0.400) | coding (148/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit | |||||
Only 100 of 304 total aligned reads displayed.
CGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAA > CP009273/1792972‑1793106 | tttACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCggcc > 1:26046205/1‑66 (MQ=255) aCGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGct < 1:24341877/68‑1 (MQ=255) aCGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGct < 1:16656594/68‑1 (MQ=255) aCGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGct < 1:34718834/68‑1 (MQ=255) aCGCGCACCCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGct < 1:26995545/68‑1 (MQ=255) cgcgCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGctc < 1:30223570/68‑1 (MQ=255) cgcgCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGc > 1:18519273/1‑66 (MQ=255) gcgcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGctct < 1:24675796/68‑1 (MQ=255) gcgcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGctct < 1:35752646/68‑1 (MQ=255) gcATTCAGCGCCTGCTGGACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCtcttc < 1:29054737/68‑1 (MQ=255) gcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCtctt < 1:32443989/67‑1 (MQ=255) aTTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTg < 1:22835292/68‑1 (MQ=255) tCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGCCGCTCTTCTGGc < 1:3855231‑M2/68‑2 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:21659809‑M2/68‑6 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:32631808‑M2/68‑6 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:10552121‑M2/68‑6 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcag > 1:8256377‑M2/1‑62 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcag > 1:31896286‑M2/1‑62 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcag > 1:19307150‑M2/1‑62 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca > 1:30845124‑M2/1‑62 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcgg > 1:37960226‑M2/1‑62 (MQ=255) ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:22903198‑M2/66‑6 (MQ=255) ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:8727807‑M2/66‑6 (MQ=255) ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:9139437‑M2/66‑6 (MQ=255) ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:19867621‑M2/66‑6 (MQ=255) ctgctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagc > 1:10259089‑M2/1‑60 (MQ=255) ctgctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagc > 1:5917864‑M2/1‑60 (MQ=255) gctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCa < 1:4120354/68‑1 (MQ=255) ctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCAc > 1:4616945/1‑68 (MQ=255) ctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCAc > 1:12779387/1‑68 (MQ=255) tgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCAc < 1:12168180/67‑1 (MQ=255) tgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTCGcggcagctggt > 1:4883569‑M2/1‑56 (MQ=255) aCCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagctggtgcgg > 1:26578814‑M2/1‑53 (MQ=255) aCCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAg > 1:33460781/1‑68 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagctggtgcggt > 1:31712707‑M2/1‑52 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCGCGCAgg > 1:34088480/1‑68 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg > 1:39602942/1‑68 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg < 1:27761041/68‑1 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg < 1:962606/68‑1 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg > 1:12087165/1‑68 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg < 1:1349799/68‑1 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCCCACCAGCTGCCGGACGCTCTTCTGGcggcagctggtgcggt > 1:32743678‑M2/1‑52 (MQ=255) ccTGCTCATTCGCGTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagctggtgcggt > 1:28311450‑M2/1‑52 (MQ=255) cTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAggg > 1:7333745/1‑68 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:38830444/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:16114114/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:22482722/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:13407638/68‑1 (MQ=255) ctctATCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcg > 1:25296295/1‑68 (MQ=255) tctTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCACAAGCAGGgtcg > 1:20636973/1‑67 (MQ=255) tttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:15525947/68‑1 (MQ=255) tttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:6331332/68‑1 (MQ=255) tttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:13110066/68‑1 (MQ=255) ttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:32244276/67‑1 (MQ=255) tCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATc < 1:37166001/68‑1 (MQ=255) cGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagctggtgcggttatcaacgaa > 1:39272295‑M2/1‑42 (MQ=255) gCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTg > 1:39140752/1‑68 (MQ=255) ttCGTTGATAACCGCACCAGCTGCCGGACGCGCTTCTGGcggcagctggtgcggttatcaacgaagcg > 1:39409874‑M2/1‑39 (MQ=255) tCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAg < 1:23900279/68‑1 (MQ=255) gTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAggg < 1:20971907/68‑1 (MQ=255) gTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAggg < 1:14259639/68‑1 (MQ=255) gTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAggg < 1:19167459/68‑1 (MQ=255) tGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGtt < 1:1784431/68‑1 (MQ=255) tGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGt < 1:36277045/67‑1 (MQ=255) tAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAg > 1:13805754/1‑68 (MQ=255) aaCCGCACCCGCTGCCGCACGCTCTTCTGGcggcagccggtgcggttatcaacgaagcgaaagagcag > 1:17346084‑M2/1‑30 (MQ=255) aaCCGCACCAGCTGCCGGACGATCTTCTGGCGGCAGCTCACGCAGGGACGTCATCTGAAGGGTTAAGt > 1:27365216/1‑68 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGATGGGTTAAGt > 1:33867141/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:3203809/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:13971233/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:26425410/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:20343119/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:3131138/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:31074097/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:24935083/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:8616082/1‑67 (MQ=255) ccGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGc < 1:24024042/68‑1 (MQ=255) cGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGcc < 1:24829960/68‑1 (MQ=255) aCCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGtt < 1:14839871/58‑1 (MQ=255) aCCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtt < 1:38269292/68‑1 (MQ=255) aCCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtt > 1:11091920/1‑68 (MQ=255) aCCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtt < 1:71437/68‑1 (MQ=255) aCCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtt < 1:6086597/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:30426526/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGGCGTCATCTGAAGGGTTAAGTGCCCttt < 1:5242520/68‑1 (MQ=255) aGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttttt > 1:36520642/1‑68 (MQ=255) gCTGCCGccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcag > 1:17517353‑M1/1‑7 (MQ=255) gCTGCCGccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcag > 1:8435886‑M1/1‑7 (MQ=255) cTGCCGccagaagagcgtccggcagctggtgcggttatcaacgaagcgacagagcaggttcagcaggc > 1:33350105‑M1/1‑6 (MQ=255) cTGCCGccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcaggc > 1:35610616‑M1/1‑6 (MQ=255) tGCCGccagaagagcgtccggcaggtggtgcggttatcaacgaagcgaaagagcaggttcagcagg < 1:23448126‑M1/66‑62 (MQ=255) tGCCGccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcaggcg < 1:12589287‑M1/68‑64 (MQ=255) tGCCGccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcagg < 1:30807111‑M1/66‑62 (MQ=255) tGCCGccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcagg < 1:24555786‑M1/66‑62 (MQ=255) tGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTAc < 1:37064006/68‑1 (MQ=255) ggccgccagaagagcggccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcaggcg < 1:22847615‑M1/67‑64 (MQ=255) cgccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcaggcgctg > 1:2893634‑M1/1‑2 (MQ=255) cGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCa < 1:216205/68‑1 (MQ=255) cGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCa < 1:15877813/68‑1 (MQ=255) gccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcaggcgctga < 1:10011884‑M1/68‑68 (MQ=255) | CGCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAA > CP009273/1792972‑1793106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |