BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3375198 =	660 (1.390)	46 (0.120)	11/94	NT	8.2%	coding (1097/1368 nt)	degQ	serine endoprotease, periplasmic
*	?	CP009273	3375228 =	479 (1.200)	46 (0.120)	11/94	NT	8.2%	coding (1127/1368 nt)	degQ	serine endoprotease, periplasmic

Only 100 of 259 total aligned reads displayed.

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3375273‑3375198

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG  >  CP009273/3375228‑3375293

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                            >  1:38893171/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                            >  1:37720143/1‑68

 CTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA                                                                           >  1:19303487/1‑68

   taGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:34666202/66‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:23600465/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:39523175/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:18564961/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:39123953/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:30673448/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:212547/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:34324832/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:29396953/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:38041787/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:26885992/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:24705498/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:29216577/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:28360966/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:36968083/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:35262811/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:26600684/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:27155965/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:15294021/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:34016746/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:6329145/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:6051771/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:13384439/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:31611339/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:14185917/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:838809/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:14835911/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:885164/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:1581358/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:894796/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:16383469/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:16954455/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:5220621/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:10142573/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:4526206/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGGTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:31410978/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGCTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:38134445/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGCCGCACCTTCCAGGGCTGGCGTGATCATTTCAGC                                                                         <  1:28565330/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCCCTCAACGTTGCACCATCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:14598557/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                       <  1:39419326/68‑1

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                     >  1:18150149/1‑68

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                     >  1:30512099/1‑68

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:30317860/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:32371953/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:7723181/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:37246880/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:22443235/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:20894343/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:20348876/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                     >  1:5098923/1‑67

        GCCAGCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:29967928/68‑1

          CATCTTTTAGCTGACCATCGCGCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAA                                                                  <  1:34455344/68‑1

           ATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAG                                                                 <  1:26774304/68‑1

             CTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                               <  1:29094279/68‑1

             CTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                               <  1:24991597/68‑1

                  cGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCGGGCGTGATCATTTCCGCGCGGGAAGGTGCAAC                                                          <  1:21825536/67‑1

                  AGCTGACCCACGCTCAACGATGCACCTCCCAGCGCTGGCGTGATCATTTCAGCGCTTGAAGGTGCAAC                                                          <  1:31213924/68‑1

                  AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:21364728/68‑1

                  AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:13699903/68‑1

                     TGACCATCGCTCAACGTTGCTCCTTCCAGCGCTGGCGTGATCATTGCAGCGCTGGAAGGTGCAACGT                                                        <  1:26547505/67‑1

                     TGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT                                                        <  1:25575418/67‑1

                     TGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACG                                                         <  1:10614908/66‑1

                     TGACCATCGCTCAACGTTGCACCTTCCAGCGCGGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT                                                        <  1:27362652/67‑1

                     TGACCATCGCACAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT                                                        <  1:12118777/67‑1

                        CCATCGCTCAACGTAGCACCTTCCACCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAG                                                    <  1:12386519/68‑1

                         CATCGCTCAACGTTGCACCTTCCCGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGC                                                   <  1:18406306/68‑1

                                  ACGCTGCACCTACCAGCCCGGGCGTGAACATTTCAGCGCTGGAAGCTGCAACGTTGAGCGATGGTCAG                                          <  1:22584221/68‑1

                                   cggTGCACCTTCCAGCGCTGGCGGGAGCATTTCAGCGCGGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:1732484/65‑1

                                   CGTTGCACCTTCCCCCGCGGGCGTGATCATTCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:38312087/68‑1

                                   CGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:9340320/68‑1

                                   CGTTGCACCTTCCAGCGCTGGCGTGATCATTGCCGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:5649951/68‑1

                                   CGTTCCACCTGCCAGCGCTGCCGGGAGCATTTCCGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:19437127/68‑1

                                      TGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCATCGTTGAGCGATGGTCAGCTAA                                      <  1:31990015/68‑1

                                                   GCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAA                         >  1:28196634/1‑68

                                                                   CAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGAT         <  1:4329687/68‑1

                                                                    AGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATG        >  1:32967052/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:29895334/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:8099648/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:12678639/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:13254097/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:17760722/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:18116795/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:34240769/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:35633754/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:19997717/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     <  1:11337799/68‑1

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:24573678/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     <  1:2528550/68‑1

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:25890898/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:36585594/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:10763332/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGA       <  1:26238683/66‑1

                                                                         TGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGT    <  1:38686356/67‑1

                                                                          GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG  <  1:19584424/68‑1

                                                                          GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG  <  1:2334151/68‑1

                                                                           GAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG  >  1:3369210/1‑67

                                                                           GAAGGTGCAAAGTTGTGCGATGGTTAGCTAAAAGATGGCGGCTAAGGTATTAAAATCGATGAAGTTG  <  1:35846629/67‑1

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3375273‑3375198

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG  >  CP009273/3375228‑3375293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.