New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3385701NA (NA)5 (0.010)
+CTACAAACG		 4/94 NT NA noncoding (267/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences
?CP009273 = 3385752 NA (NA)intergenic (‑365/+65) tldD/yhdP putative peptidase/DUF3971‑AsmA2 domains protein

CGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3385635‑3385701
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAACATAACCGTAGGTCGGA  <  CP009273/3385752‑3385733
                                                                   |||||||||                    
CGCCGTATCCGACCTACGGATATGCTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCC                              <  1:29508705/68‑1
          GACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAACGGA                    <  1:33209718/68‑1
          GACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAACGGA                    <  1:37989492/68‑1
                       GTTCCGTTTGAAGGCCTGATAAGCCGCACAGCGTCGCATCAGGCCTACAAACGGAACATAACCGTAGG       <  1:21590102/68‑1
                         TCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAACGGAACATAACCGTAGGTC     >  1:3287379/1‑68
                           CGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAACGGAACATAACCGTAGGTCGG   <  1:23332133/68‑1
                           CGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAACGGAACATAACCGTAGGTCGG   <  1:2461218/68‑1
                            GTTTGTAGGCCTGATAAGACGCACAGCGCCGCATCAGGCCTACAAACGGAACATAACCGTAGGTCGGA  <  1:16771738/68‑1
                                                                   |||||||||                    
CGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3385635‑3385701
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAACATAACCGTAGGTCGGA  <  CP009273/3385752‑3385733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.