| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3385701 | NA (NA) | 5 (0.010) +CTACAAACG |
4/94 | NT | NA | noncoding (267/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | = 3385752 | NA (NA) | intergenic (‑365/+65) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein | |||||
Only 100 of 908 total aligned reads displayed.
ATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTT > CP009273/3385641‑3385768 | atccgACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg > 1:10465119‑M2/6‑65 (MQ=255) tccgACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCt > 1:36676171‑M2/5‑67 (MQ=255) ccgACGTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc < 1:872711‑M2/65‑1 (MQ=255) ccgACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCtgt < 1:11514289‑M2/65‑2 (MQ=255) ccgACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc < 1:39545871‑M2/65‑1 (MQ=255) ccgACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc < 1:26859737‑M2/65‑1 (MQ=255) gACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCg < 1:35997337‑M2/67‑1 (MQ=255) aTGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTg < 1:39209640/68‑1 (MQ=31) aTGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTg < 1:1751141/68‑1 (MQ=31) tGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa > 1:18839752/1‑68 (MQ=33) tGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa > 1:13510206/1‑68 (MQ=33) gTTCCGTTTGTAGGCCTGATAAGACGCAGAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa > 1:28332737/1‑67 (MQ=18) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa > 1:22246288/1‑67 (MQ=33) tcggTTTGAAGGCCTGATATGACGCACAGCGGCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:38628998/65‑1 (MQ=11) tCCGTTTGTAGTCCTGATAAGACGCACACCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:34648596/68‑1 (MQ=255) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:26658386/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:5540315/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:5197696/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:37014847/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:36395446/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:14827026/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:29921381/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:20878288/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:17975641/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:38845670/68‑1 (MQ=35) tCCGTTTGTAGGCCTGAAAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:16878353/1‑67 (MQ=25) tCCGTTTGAAGGCCTGATAAGACGCACCGCGTCTCAAAAGGAAACGGCTGCCGGATGCGGCGTGAACg < 1:1440098/68‑1 (MQ=11) tCCGGTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg < 1:15857596/68‑1 (MQ=25) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGc < 1:679853/68‑1 (MQ=35) cGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGcc < 1:29000518/68‑1 (MQ=35) cGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGc > 1:11317207/1‑67 (MQ=35) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCt < 1:23929861/67‑1 (MQ=39) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCACGCAACGGCTGCCGGATGCGGCGTGAACGcccaa > 1:13989673/1‑66 (MQ=255) ttGTAGGCCTGAAAAGACGCACAGCGGCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTa < 1:33447880/68‑1 (MQ=255) tGTCGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt < 1:33661513/68‑1 (MQ=255) tGTATGCCTGAAAAGACTCACCGCTTCGGATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt < 1:20106277/68‑1 (MQ=14) tGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt < 1:6584413/68‑1 (MQ=40) tGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt < 1:2949103/68‑1 (MQ=40) tGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt < 1:30132593/68‑1 (MQ=40) tGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt < 1:16531187/68‑1 (MQ=40) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCg > 1:24519946/1‑67 (MQ=40) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCg > 1:2632840/1‑67 (MQ=40) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa < 1:27696624/68‑1 (MQ=40) gCCTGCTAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:28557659/68‑1 (MQ=255) ccTTATACGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:110091/67‑1 (MQ=255) ccTGATAATACGCACAGGGTCGCATATGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:588405/67‑1 (MQ=14) ccTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:31226199/67‑1 (MQ=255) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATccagc < 1:3170143/67‑4 (MQ=255) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa < 1:38444508/66‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:12191164/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:10030068/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:24813871/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa > 1:2172693/1‑66 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:24344073/67‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:12556589/67‑1 (MQ=40) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGAc < 1:29725503/67‑1 (MQ=40) ccTGATAAGACCCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGa < 1:6996814/66‑1 (MQ=255) cTGATAAGACGCAGAGCGTCGCATCAGGAAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCt < 1:11974158/68‑1 (MQ=255) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCt < 1:3322350/68‑1 (MQ=40) gATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTAc < 1:19487214/68‑1 (MQ=40) gATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTAc < 1:13739108/68‑1 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACgg > 1:19277172/1‑68 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACgg < 1:18562672/68‑1 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACgg > 1:1063435/1‑68 (MQ=40) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACg < 1:15354592/67‑1 (MQ=40) tAAGACGCACAGCGACGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACgg < 1:35224135/68‑1 (MQ=255) aaGACGCACAGCGTCGCTTCAGGCAAAGGCTGACTGATGCGTCGTTAACGCCCTATCCGACCTACGGt < 1:7244593/68‑1 (MQ=11) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:20461062/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:23490138/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:25141105/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:32877501/68‑1 (MQ=40) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt < 1:30658543/68‑1 (MQ=40) aGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGtt > 1:13047966/1‑68 (MQ=40) aCGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTAt > 1:21211816/1‑68 (MQ=40) aCGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTAt > 1:32429525/1‑68 (MQ=40) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATg > 1:30882163/1‑68 (MQ=40) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATg > 1:27259990/1‑68 (MQ=40) gCACAGCGTCGCATCTGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:23084905/68‑1 (MQ=255) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:9535755/68‑1 (MQ=40) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:35645560/68‑1 (MQ=40) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:34934219/68‑1 (MQ=40) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:34354269/68‑1 (MQ=40) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:37638857/68‑1 (MQ=40) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt < 1:21539781/68‑1 (MQ=40) cacaGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt > 1:19699457/1‑67 (MQ=40) acaGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt > 1:4218240/1‑66 (MQ=40) acaGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGt > 1:2247119/1‑66 (MQ=40) aGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTg > 1:4807761/1‑68 (MQ=255) gCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTg > 1:4632813/1‑67 (MQ=255) gTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGc > 1:8152294/1‑67 (MQ=255) cGCATCAGGAAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTc < 1:9173142/67‑1 (MQ=255) aTCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTg > 1:1714621/1‑68 (MQ=255) aTCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTg > 1:33969472/1‑68 (MQ=255) aTCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTg > 1:31953936/1‑68 (MQ=255) tCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTgg < 1:32650389/68‑1 (MQ=255) cAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGc < 1:7766543/68‑1 (MQ=255) cAGGAAACGGCTGCCGGATGCGGCGTGAACGCCGTATCCGACCTACGGTTATGTTCTGGCTCGTTGGc < 1:25414076/68‑1 (MQ=255) gCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCtt > 1:16290532/1‑68 (MQ=255) cAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCt < 1:25821393/66‑1 (MQ=255) cAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCt < 1:626094/66‑1 (MQ=255) | ATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTT > CP009273/3385641‑3385768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |