| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3693271 | 338 (0.710) | 19 (0.050) | 7/94 | NT | 6.0% | intergenic (+18/+69) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small |
| ? | CP009273 | = 3693281 | 315 (0.790) | intergenic (+28/+59) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small | |||||
Only 100 of 239 total aligned reads displayed.
CCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3693196‑3693271‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccgcagGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGCG < CP009273/3693281‑3693215 CCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAA > 1:30492564/1‑68CCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAA > 1:31995639/1‑68 AGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAG > 1:38433243/1‑67 GGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGC < 1:22965034/68‑1 GATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:7640434/1‑68 GATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:17318722/1‑68 GATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:27420964/1‑68 GATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:25672196/1‑68 GATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:19409746/1‑68 GATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:28795632/1‑68 GATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:32823166/1‑68 GATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:14183487/1‑68 GATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:33216078/1‑68 GATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:13658029/1‑68 GATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:33723514/1‑68 GATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:22436096/1‑68 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:25484530/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:24587147/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:26448717/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:20449173/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:26657565/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:27310269/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:16261810/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:16117367/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:15845496/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:30943666/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:5027044/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:11542584/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCC > 1:7560248/1‑67 ATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGC < 1:9687905/66‑1 TAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGC < 1:34896873/68‑1 AAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCA > 1:14426684/1‑68 AAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCA > 1:1827034/1‑68 AAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCA > 1:37375071/1‑68 AAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCA < 1:24095940/68‑1 ACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGc > 1:26785656/1‑67 CCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGCACGTAAAAGGCCGCAGcg > 1:7352660/1‑66 CCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGGG < 1:30804924/68‑1 TGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTT > 1:20296177/1‑65 CCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAA > 1:7172842/1‑68 CCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAA > 1:33819049/1‑68 CCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAA > 1:591809/1‑68 CCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAA > 1:28998424/1‑68 CCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAA > 1:28088056/1‑68 CCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTGTTTCGTTCTTACTGCGGGTAA > 1:36028955/1‑68 TAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCAC > 1:10269390/1‑67 TAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCAC > 1:8778160/1‑67 GCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT > 1:37038642/1‑67 GCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT > 1:27768878/1‑67 GCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT > 1:29159222/1‑67 GCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT > 1:14649944/1‑67 caGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCAAGTCCCCGCCGTT > 1:21079328/3‑67 CCGCAGGGGGGATACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:8943957/66‑1 CCGCAGGGGGGATACTCTGCGGCCTTGTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTT > 1:7848057/1‑67 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:4217569/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:6647297/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:118374/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:556886/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:6081276/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:33542848/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:10101846/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:22396308/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:27008547/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:18922160/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:166688/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:29500934/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:21843240/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:30241509/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:23337843/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTC > 1:15047464/1‑68 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTT > 1:31655389/1‑67 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:6853037/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:23743955/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:19639490/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:19556811/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:19688637/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:5476115/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:124696/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:9283412/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:18504523/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:38772946/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:36281839/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:33491801/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:13919794/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGT < 1:9441906/66‑1 CCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACACAGTCGCAGCCGTTC > 1:5872402/1‑68 GCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAG < 1:10673825/68‑1 AGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGC > 1:39418108/1‑68 AGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGC > 1:2703142/1‑68 AGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGC > 1:15492348/1‑68 AGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGC > 1:13336305/1‑68 AGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGG < 1:35547163/67‑1 AGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGG < 1:14517968/67‑1 AGGGGGGAAACTCTGCGGCCTTTTACGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGG < 1:30640851/67‑1 GGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGCG > 1:20885154/1‑68 GGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGCG > 1:19790315/1‑68 GGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGCG > 1:23899049/1‑68 GGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGCG > 1:32885125/1‑68 GGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGCG > 1:31492739/1‑68 GGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGC > 1:1856737/1‑67 CCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3693196‑3693271‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccgcagGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGCG < CP009273/3693281‑3693215 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |