New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3693271338 (0.710)19 (0.050) 7/94 NT 6.0% intergenic (+18/+69) bcsG/ldrD DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small
?CP009273 = 3693281 315 (0.790)intergenic (+28/+59) bcsG/ldrD DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small

Only 100 of 881 total aligned reads displayed.

ACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACAC  >  CP009273/3693205‑3693338
                                                                  |                                                                   
cggaagtaaagtgtcatgcgggcgtcaggctgccgtaatggcaatttgcgccccgaccACGACGcagc                                                                    <  1:25354292‑M1/10‑2 (MQ=255)
aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:13941955/1‑68 (MQ=255)
aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:334996/1‑68 (MQ=255)
aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:16181905/1‑68 (MQ=255)
aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:23862464/1‑68 (MQ=255)
aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:3864553/1‑68 (MQ=255)
aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:30277766/1‑68 (MQ=255)
aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:22216023/1‑68 (MQ=255)
aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:30055899/1‑68 (MQ=255)
aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    <  1:35452854/68‑1 (MQ=255)
aCCGTACGTACGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:729783/1‑68 (MQ=255)
 ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGATAAAGGCCGCagag                                                                   >  1:37454033/1‑68 (MQ=255)
 ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   <  1:12430086/68‑1 (MQ=255)
 ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   <  1:33629266/68‑1 (MQ=255)
 ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   >  1:29390567/1‑68 (MQ=255)
 ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   >  1:21494111/1‑68 (MQ=255)
 ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   >  1:17512801/1‑68 (MQ=255)
 ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTCACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   <  1:26636593/68‑1 (MQ=255)
     aCGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGttt                                                                >  1:9485106/1‑67 (MQ=255)
     aCGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGttt                                                                >  1:20240453/1‑67 (MQ=255)
     aCGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGttt                                                                >  1:16642710/1‑67 (MQ=255)
     aCGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGttt                                                                >  1:3093655/1‑67 (MQ=255)
     aCGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGttt                                                                >  1:10734626/1‑67 (MQ=255)
      cGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTc                                                               >  1:37604841/1‑67 (MQ=255)
       gTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcc                                                              >  1:23122987/1‑67 (MQ=255)
       gTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcc                                                              >  1:33914521/1‑67 (MQ=255)
        ttCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTccc                                                             >  1:12859900/1‑67 (MQ=255)
        ttCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTccc                                                             >  1:35935801/1‑67 (MQ=255)
        ttCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTccc                                                             >  1:34868653/1‑67 (MQ=255)
         tCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcccc                                                            <  1:8461007/67‑1 (MQ=255)
          cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCc                                                          >  1:32885125‑M2/1‑67 (MQ=255)
          cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCc                                                          >  1:31554887‑M2/1‑67 (MQ=255)
          cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCc                                                          >  1:19439828‑M2/1‑67 (MQ=255)
          cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCc                                                          >  1:6949445‑M2/1‑67 (MQ=255)
            ccTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct                                                         <  1:4085189‑M2/67‑3 (MQ=255)
               gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:22667791‑M2/1‑62 (MQ=255)
               gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:39380307‑M2/1‑62 (MQ=255)
               gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:600278‑M2/1‑62 (MQ=255)
               gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:14768340‑M2/1‑62 (MQ=255)
               gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcg                                                      <  1:25722214‑M2/67‑6 (MQ=255)
                aaCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAACAAGGCCGCAGAGTATCCCCCctgcgg                                                     >  1:7848057‑M2/1‑61 (MQ=255)
                 aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAACGGCCGCAGAGTTTCCCCCctgcggc                                                    >  1:13481994‑M2/1‑60 (MQ=255)
                 aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     <  1:19633305‑M2/66‑7 (MQ=255)
                   ggcggcGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTg                                                 >  1:11116603/1‑68 (MQ=255)
                     cggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTgg                                                <  1:25882103/67‑1 (MQ=255)
                     cggcgACGGGGGGCCTTACCCGCAGTAAGAACTAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTgg                                                <  1:15253952/67‑1 (MQ=255)
                      ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                               >  1:3901211/1‑67 (MQ=255)
                      ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                               >  1:20400261/1‑67 (MQ=255)
                      ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                               >  1:8201315/1‑67 (MQ=255)
                      ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                               <  1:8906582/67‑1 (MQ=255)
                      ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                               >  1:27540533/1‑67 (MQ=255)
                               gTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgttctta                                      >  1:10269390‑M2/1‑46 (MQ=255)
                                 gCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAt                                   >  1:22481555/1‑68 (MQ=255)
                                 gCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAt                                   >  1:24611744/1‑68 (MQ=255)
                                  ccTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt                                  >  1:34438325/1‑68 (MQ=255)
                                  ccTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt                                  >  1:30638720/1‑68 (MQ=255)
                                   cTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt                                  >  1:36675447/1‑67 (MQ=255)
                                    ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTccccc                                                           >  1:10012662/1‑41 (MQ=255)
                                    ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgttcttactgcgg                                >  1:18368469‑M2/1‑41 (MQ=255)
                                      aCCCGCAGTAAGAACGAAAACGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                              <  1:21116074/68‑1 (MQ=255)
                                      aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                              <  1:5830858/68‑1 (MQ=255)
                                      aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                              <  1:17918816/68‑1 (MQ=255)
                                      aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                              >  1:36092569/1‑68 (MQ=255)
                                      aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                              <  1:12158923/68‑1 (MQ=255)
                                      aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                              <  1:27908220/68‑1 (MQ=255)
                                       cccGAAGTAAGAACGAAAAAGGCCGAAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGAAAATTACCAt                             >  1:17024444/1‑68 (MQ=255)
                                        ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:32716912/1‑68 (MQ=255)
                                        ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:24892731/1‑68 (MQ=255)
                                        ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:32331337/1‑68 (MQ=255)
                                        ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:23605676/1‑68 (MQ=255)
                                            aGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACg                         <  1:19220411/67‑1 (MQ=255)
                                              tAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCa                      >  1:15563268/1‑68 (MQ=255)
                                                  aaCGAAAAAGGCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccag                   >  1:29137606‑M1/1‑17 (MQ=255)
                                                  aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                     >  1:28288140/1‑65 (MQ=255)
                                                   aCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGcc                   <  1:26320754/66‑1 (MQ=255)
                                                       aaaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACg              <  1:14569008/67‑1 (MQ=255)
                                                        aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc             >  1:11801792/1‑67 (MQ=255)
                                                         aaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGccc           <  1:33318093/68‑1 (MQ=255)
                                                           GGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGccgcccgc         <  1:38034639‑M1/68‑1 (MQ=255)
                                                           GGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc         <  1:9359771‑M1/68‑1 (MQ=255)
                                                           GGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc         <  1:6314684‑M1/68‑1 (MQ=255)
                                                            gCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt         >  1:37201775‑M1/1‑7 (MQ=255)
                                                            gCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt         >  1:7589570‑M1/1‑7 (MQ=255)
                                                            GCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa        <  1:20883492‑M1/68‑1 (MQ=255)
                                                             ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc       >  1:6647297‑M1/1‑6 (MQ=255)
                                                             ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc       >  1:15047464‑M1/1‑6 (MQ=255)
                                                             ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc       >  1:27008547‑M1/1‑6 (MQ=255)
                                                             ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc       >  1:18572763‑M1/1‑6 (MQ=255)
                                                             ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc       >  1:28919608‑M1/1‑6 (MQ=255)
                                                             ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc       >  1:21843240‑M1/1‑6 (MQ=255)
                                                             ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt         <  1:5476115‑M1/66‑61 (MQ=255)
                                                             ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt         <  1:14443872‑M1/66‑61 (MQ=255)
                                                             ccGCAGgggggaaactctgcggccgttttcgttcttactgcgggtaaggcacccagtcgccgccgttc       >  1:24013265‑M1/1‑6 (MQ=255)
                                                             CCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt       <  1:19779980‑M1/68‑1 (MQ=255)
                                                             CCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt       <  1:31380788‑M1/68‑1 (MQ=255)
                                                                 aGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggc   >  1:13336305‑M1/1‑2 (MQ=255)
                                                                 AGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac    >  1:31769271‑M1/1‑67 (MQ=255)
                                                                  GAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCatgagac  <  1:27103731‑M1/68‑4 (MQ=255)
                                                                  GAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGacac  <  1:4967706‑M1/68‑1 (MQ=255)
                                                                  GAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGacac  <  1:18860695‑M1/68‑1 (MQ=255)
                                                                  |                                                                   
ACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACAC  >  CP009273/3693205‑3693338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.