| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3808465 | NA (NA) | 4 (0.010) | 3/92 | NT | NA | noncoding (9/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3808469 | NA (NA) | noncoding (13/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 671 total aligned reads displayed.
GACGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGTT > CP009273/3808399‑3808533 | cGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACtt < 1:32572729/68‑1 (MQ=255) cGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACt < 1:5412540/67‑1 (MQ=255) cGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACt < 1:7967663/67‑1 (MQ=255) cGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACt < 1:30047516/67‑1 (MQ=255) cGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACt < 1:26331175/67‑1 (MQ=255) aCGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGa > 1:24477987/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGa < 1:1392084/67‑1 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg < 1:33565080/68‑1 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:33206241/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:8992031/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:15779332/1‑68 (MQ=255) gCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCt > 1:6611529/1‑68 (MQ=255) cGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAAc < 1:4193792/68‑1 (MQ=255) cGCTAATAGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAAc < 1:23275581/68‑1 (MQ=255) gCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACg < 1:20291218/68‑1 (MQ=255) tAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGc < 1:35243464/67‑1 (MQ=255) tGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCaa > 1:37408610/1‑66 (MQ=255) gCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAAc > 1:19941411/1‑67 (MQ=255) ggCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAActct < 1:16138596/68‑1 (MQ=255) ggCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAActct < 1:16461708/68‑1 (MQ=255) ggCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAActct < 1:36743010/68‑1 (MQ=255) ggCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAActct < 1:7748168/68‑1 (MQ=255) gCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAActct > 1:26939090/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:29288203/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:10733320/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:25744516/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:4929265/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:20450044/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:5697081/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:3489142/1‑67 (MQ=255) acaGTAGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACACCAAACTCTTc > 1:28365716/1‑67 (MQ=255) ttGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGAt < 1:18898950/68‑1 (MQ=255) tGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTcgcg < 1:23059872/65‑1 (MQ=255) tGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTcgcg < 1:39629394/65‑1 (MQ=255) tGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATa > 1:34391296/1‑68 (MQ=255) tGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATa > 1:23845976/1‑68 (MQ=255) gCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAG‑TTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:18148411/68‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:2746119/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:28086069/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:14957270/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:6125476/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:12168204/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:30390022/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:32132228/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:4526645/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:12521254/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:13155980/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:21636742/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:21835636/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:22383902/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:15516551/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:2293422/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:26076485/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:25418524/1‑67 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:19265028/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:39250622/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:22719761/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:10033964/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:27763064/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:11887097/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:11454878/1‑68 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:37026972/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:3573757/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:875477/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:3121463/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:17760096/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCtt > 1:11211623/1‑68 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCtt > 1:21091938/1‑68 (MQ=255) atGACGCCGGATGAaaagtcatccggcgtcatattactgcaactgtgccgcaattagcggccagcgg > 1:28870069‑M1/1‑14 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAACCTCTTCGCGATAGGCCTTaa > 1:38071314/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:17967107/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:38796119/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:23557082/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:19595014/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:36316620/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:8252542/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:515402/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:30769582/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:24885677/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:14300351/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:7147997/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:26681224/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:17440071/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:32824762/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:31470900/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:29551526/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:1278425/1‑67 (MQ=255) gACGCCGGATGACGTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:13560375/1‑67 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc < 1:17128839/68‑1 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc < 1:30524989/68‑1 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgccg < 1:10191789/68‑1 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgccg < 1:5912617/68‑1 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:8447985/1‑67 (MQ=255) ccGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgccg > 1:9249147/1‑67 (MQ=255) cGGATGAaaagtcatccggcgtcatattacagcaactgtgccgcaattagcggccagcgggcgtcaa < 1:37755625‑M1/67‑61 (MQ=255) aTGAaaagtcatccggcgtcatattactgcaactgtgccgcaattagcggccagcgggcgtcaaaat < 1:16878757‑M1/67‑64 (MQ=255) aCTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAGCCGCCGCCAGATGt > 1:35959982/1‑68 (MQ=255) aCTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGt > 1:6977674/1‑68 (MQ=255) aCTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGt > 1:38453900/1‑68 (MQ=255) aCTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGt < 1:33935238/68‑1 (MQ=255) | GACGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGTT > CP009273/3808399‑3808533 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |