| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3921522 | 619 (1.300) | 44 (0.100) | 6/100 | NT | 7.2% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 574 (1.350) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
Only 100 of 1160 total aligned reads displayed.
AGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGAT > CP009273/3921455‑3921589 | gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:34590269/1‑68 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:33743778/1‑68 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:32465261/1‑68 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:21466968/1‑68 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:769227/1‑68 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCC < 1:2853435‑M1/65‑1 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCGTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:37005121/1‑68 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg < 1:10003282/67‑1 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg < 1:3293378/67‑1 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg > 1:31027049/1‑67 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg < 1:14344712/67‑1 (MQ=255) gAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg > 1:12589311/1‑66 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCt > 1:27693576/1‑67 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:14065362/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:26759825/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:3741071/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:37995027/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:6202379/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:19050079/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:9740249/1‑68 (MQ=255) aTGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGa > 1:30730540/1‑67 (MQ=255) aTGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGa > 1:28749212/1‑67 (MQ=255) tGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGc < 1:17357654/68‑1 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGCGCAg < 1:11370863‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:31532801‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:23415437‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:33362826‑M2/68‑2 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc > 1:29089739‑M2/1‑65 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc < 1:24549101‑M2/68‑4 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc < 1:34027675‑M2/68‑4 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc > 1:38346592‑M2/1‑65 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAgg > 1:29931208‑M2/1‑65 (MQ=255) tgctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCt < 1:11972560/68‑1 (MQ=255) tgctgTTCGCGAGAGCGTCCCTTCTCTGCCGCAATAATTTATCGCCGCCAGCGTCTGAGCAggcggc > 1:27104071‑M2/1‑61 (MQ=255) gctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCt > 1:6858194/1‑67 (MQ=255) ttCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCa > 1:19830121/1‑68 (MQ=255) tCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCa < 1:16695048/67‑1 (MQ=255) cgcgAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATc < 1:7429804/68‑1 (MQ=255) gcgAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATcc < 1:4788008/68‑1 (MQ=255) gcgAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATc > 1:15394091/1‑67 (MQ=255) gagaGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCg < 1:3774632/68‑1 (MQ=255) gagaGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCg < 1:8029838/68‑1 (MQ=255) agagCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:13853970/1‑68 (MQ=255) agagCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:20549474/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:11705011/1‑68 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGt < 1:33257082/66‑1 (MQ=255) cccTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagcaga > 1:5150863‑M2/1‑43 (MQ=255) cccTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagcaga > 1:30190753‑M2/1‑43 (MQ=255) cTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgc < 1:16396544/68‑1 (MQ=255) cTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgc < 1:17722541/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCTGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:24813710/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGTCTGCTTCGCATCCCGGTATCAAAgcg < 1:26564630/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:8344655/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:25551824/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:4202048/68‑1 (MQ=255) ctctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGcc < 1:26335162/68‑1 (MQ=255) ctctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGcc < 1:17068200/68‑1 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:29664794/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:9242077/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:35397412/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:35091133/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:36482971/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:15725063/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:25990723/1‑68 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:7068255/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:36742033/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:12757855/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTACGCATCCCGGTATCAAAGCGCCAg > 1:3869115/1‑68 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:1052913/1‑68 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:32726435/1‑68 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:19291754/1‑68 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:23085426/1‑68 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:22176564/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCtgctcagacgctggcggcgataaattattacagcagagaagggacgc > 1:18775456‑M1/1‑20 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:34240703/1‑68 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:18319510/67‑1 (MQ=255) aataatTTATCCCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:21790241/67‑1 (MQ=255) ataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATc < 1:5803762/68‑1 (MQ=255) taatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCg > 1:22774455/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:8762873/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:13363886/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:23842211/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:20880335/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:21242081/1‑68 (MQ=255) tCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgc < 1:10780202/68‑1 (MQ=255) gccgcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagca > 1:12991212‑M1/1‑6 (MQ=255) gcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctg < 1:4466254‑M1/68‑66 (MQ=255) gcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctg < 1:5535510‑M1/68‑66 (MQ=255) gcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctg < 1:35660‑M1/68‑66 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:22464796‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:27946451‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:36117810‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:15085761‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:3199265‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:34827904‑M1/68‑68 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAACGCGCCAGATATGATCGAAAATGCGCatgat < 1:16041517/68‑1 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:39057917/68‑1 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:20210736/68‑1 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:28377043/68‑1 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:1473196/68‑1 (MQ=255) | AGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGAT > CP009273/3921455‑3921589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |