| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4127796 | NA (NA) | 8 (0.020) | 7/98 | NT | NA | noncoding (80/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4127807 | NA (NA) | noncoding (91/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 1031 total aligned reads displayed.
TGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAT > CP009273/4127730‑4127863 | gAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATaa < 1:19242092/68‑1 (MQ=40) aCGCCTTATCCGGCCTACAAACGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGc < 1:9063123/68‑1 (MQ=255) cGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCg > 1:11977696/1‑68 (MQ=40) cGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCg > 1:30896285/1‑68 (MQ=40) ccTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTa > 1:36564694/1‑68 (MQ=40) ccTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTa > 1:36705599/1‑68 (MQ=40) ccTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTa > 1:14397399/1‑68 (MQ=40) aTCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAgcgc > 1:17225338/1‑68 (MQ=40) tCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:3701947‑M2/68‑2 (MQ=255) tCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa > 1:38935048‑M2/1‑67 (MQ=255) ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:24953564‑M2/67‑2 (MQ=255) ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:2841117‑M2/67‑2 (MQ=255) ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:16988871‑M2/67‑2 (MQ=255) cGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatc < 1:22442685‑M2/68‑4 (MQ=255) cGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatc > 1:14788587‑M2/1‑65 (MQ=255) gCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatcag < 1:30647446‑M2/68‑6 (MQ=255) gCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatcag < 1:7971312‑M2/68‑6 (MQ=255) ccTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatcag > 1:12326393‑M2/1‑62 (MQ=255) cTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatcaggc < 1:4348352‑M2/68‑8 (MQ=255) cTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatcaggc > 1:29285325‑M2/1‑61 (MQ=255) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:4009700/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:862550/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:5327211/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:22774400/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:12860627/1‑68 (MQ=40) aGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:21905521/1‑67 (MQ=40) aGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:34393211/1‑67 (MQ=40) aGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:24679440/1‑67 (MQ=40) aGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:15389465/1‑67 (MQ=40) ttCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt < 1:6212490/68‑1 (MQ=255) ttCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt < 1:4783642/68‑1 (MQ=255) tCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt > 1:3161192/1‑67 (MQ=255) tCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt > 1:28835877/1‑67 (MQ=255) aaTATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTccc > 1:3858129/1‑68 (MQ=255) tatatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:10405836/1‑68 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:32466575/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:34881886/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:35731121/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:4550176/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:15067825/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:7302768/1‑67 (MQ=255) atatTGCAGAGATTGCCTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTACCgg > 1:3271036/1‑67 (MQ=255) tatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGAc > 1:17656504/1‑68 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:9499856/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:27743596/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:25370767/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:23184100/68‑1 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg > 1:15637609/1‑67 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGc < 1:13297826/68‑1 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGc < 1:19866889/68‑1 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:2648736/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:11249698/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:16792187/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:37380506/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:35491337/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:24139331/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:29880900/1‑68 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAg < 1:33363827/67‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAg < 1:360124/67‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAg < 1:36317143/67‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:19605328/68‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:26872246/68‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:3126441/68‑1 (MQ=255) gCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGttt < 1:3363724/68‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCTATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg > 1:25825051/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg > 1:16203766/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa > 1:10866175/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa > 1:5134747/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa > 1:13150932/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgaac < 1:29106998/68‑4 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa < 1:10038661/67‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa < 1:30375255/67‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCCGGAGTTTGGa < 1:23510230/67‑1 (MQ=255) ccTGATgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtag > 1:682955‑M1/1‑6 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg > 1:20150916/1‑68 (MQ=255) cTGATgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtagg > 1:6569047‑M1/1‑5 (MQ=255) cTGATAAGCGTAGCGCatcaggcctacgaaatctctgcaatatattgaatttgcgtgcttttgtagg > 1:5825196‑M2/1‑16 (MQ=255) cTGATAAGCGTAGCGCATCTGGCAATTTTGCGTTCAAACTCCCGGACATGCCGGGAGTTTGGAGTAg < 1:34026090/67‑1 (MQ=37) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAgg < 1:22190191/68‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAgg < 1:3222459/68‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAgg < 1:13876807/68‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTACAAACTCCCGGACAAGCCGGGAGTTTGGAGTAgg < 1:18620428/68‑1 (MQ=255) tGATAAGCGTAGCTCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGt < 1:18106153/68‑1 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGt < 1:35166536/68‑1 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGt < 1:17927162/68‑1 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGt < 1:2607389/68‑1 (MQ=255) gATgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccg < 1:27091338‑M1/68‑66 (MQ=255) tgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccgga < 1:38162789‑M1/68‑68 (MQ=255) tgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccgga > 1:39227431‑M1/1‑1 (MQ=255) tgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccgga > 1:16123611‑M1/1‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACACGCCGGGAGTTTGGTGTAGGTTAt > 1:28218775/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTa < 1:38362315/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:13642079/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:14079590/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:27484246/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:37717345/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt < 1:20504745/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:32848608/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:20804076/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTAAAACTCCCGGAAAAGCCGGGAGTTTGTAGTAGGTTAt < 1:2131000/68‑1 (MQ=25) | TGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAT > CP009273/4127730‑4127863 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |