| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4127796 | NA (NA) | 8 (0.020) | 7/98 | NT | NA | noncoding (80/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4127807 | NA (NA) | noncoding (91/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 1049 total aligned reads displayed.
ATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTT > CP009273/4127740‑4127873 | ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:16988871‑M2/67‑2 (MQ=255) ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:16132072‑M2/67‑2 (MQ=255) ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:37639937‑M2/67‑2 (MQ=255) ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:36524442‑M2/67‑2 (MQ=255) cGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatc < 1:11542727‑M2/68‑4 (MQ=255) cGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatc < 1:32405801‑M2/68‑4 (MQ=255) aaaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt > 1:13646949/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:19006788/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:12894932/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:34104207/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:14000980/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:38974405/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:29341393/1‑68 (MQ=40) aGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:15389465/1‑67 (MQ=40) aTTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGGGCATCAGGCAATTTTGCGTTCaa > 1:27021501/1‑66 (MQ=255) ttCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt < 1:528029/68‑1 (MQ=255) ttCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt < 1:8304962/68‑1 (MQ=255) ttCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt < 1:6212490/68‑1 (MQ=255) tCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt > 1:33460778/1‑67 (MQ=255) tatatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCg > 1:17924041/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:24936904/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:32640454/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:23238660/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:28782831/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:31353283/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:32923031/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:4680570/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:35731121/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:36813426/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:9283416/1‑67 (MQ=255) tatTGCAGAGATTGCGTAGGCCTGCTAAGCGTAGCCCATCAGGCAAATTTGCGTTCAAACTCCCGGAc > 1:39242219/1‑68 (MQ=21) tatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGAc > 1:22368575/1‑68 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:6589033/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:4039971/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:21114411/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:27743596/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:28429522/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:30738942/68‑1 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg > 1:27415762/1‑67 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg > 1:2560718/1‑67 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg > 1:15637609/1‑67 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg > 1:37226522/1‑67 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGc < 1:19866889/68‑1 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:13151186/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:35491337/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:12660929/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:30403574/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:10988852/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:28212342/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:29880900/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:22852506/1‑68 (MQ=255) agaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg > 1:8692135/1‑68 (MQ=255) gaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGa > 1:21953833/1‑68 (MQ=255) aTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGCCAAGCCGGGAg > 1:20758658/1‑68 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAg < 1:26023459/67‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:4442469/68‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:17577712/68‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:19605328/68‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:14884081/68‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:31941734/68‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:38138099/68‑1 (MQ=255) atGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAACCTCCCGGCCACGCCGGGAGt < 1:23593602/67‑1 (MQ=18) tGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGtt > 1:1625387/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttt > 1:25317689‑M2/1‑22 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg < 1:18495085/68‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg > 1:24095290/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg > 1:22614250/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg < 1:2643761/68‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg < 1:38364887/68‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa < 1:14356946/67‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa < 1:35990717/67‑1 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTa > 1:5064488/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg > 1:3453057/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg > 1:13813887/1‑68 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAgg < 1:31165528/68‑1 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGt < 1:35166536/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:5649516/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:12319892/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt < 1:20175678/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:18108663/1‑68 (MQ=255) aaGAGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAtt < 1:16747210/68‑1 (MQ=255) aGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAtt > 1:13311553/1‑67 (MQ=255) aGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAtt > 1:10689953/1‑67 (MQ=255) cGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTccc > 1:34842930/1‑68 (MQ=255) gTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTccc > 1:6840596/1‑67 (MQ=255) gTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTccc > 1:10280979/1‑67 (MQ=255) gTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTccc > 1:26838872/1‑67 (MQ=255) gTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTccc < 1:20403012/67‑1 (MQ=255) gTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTccc > 1:17179106/1‑67 (MQ=255) gTAGCGCATCAGGCAATTTAGCGTTCAAACTCCCGCACAAGCCGGGAGTTTCGAGTAGGTAATTccc > 1:24520167/1‑67 (MQ=37) aGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCAct < 1:38684265/68‑1 (MQ=255) aGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCAct < 1:21583108/68‑1 (MQ=255) aGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCAct < 1:7313542/68‑1 (MQ=255) aGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCAct < 1:1193749/68‑1 (MQ=255) aGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCAct < 1:1001320/68‑1 (MQ=255) gcATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCActct < 1:29153108/67‑1 (MQ=255) gcATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCActct < 1:15148816/67‑1 (MQ=255) gcATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCtt > 1:36290402/1‑68 (MQ=255) gcATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCtt > 1:33721295/1‑68 (MQ=255) gcATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCtt > 1:9489952/1‑68 (MQ=255) | ATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTT > CP009273/4127740‑4127873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |