| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4521717 | 587 (1.240) | 4 (0.010) | 3/94 | NT | 0.75% | intergenic (‑249/+150) | sgcX/yjhY | putative endoglucanase with Zn‑dependent exopeptidase domain/pseudogene, zinc finger protein family |
| ? | CP009273 | = 4521731 | 562 (1.410) | intergenic (‑263/+136) | sgcX/yjhY | putative endoglucanase with Zn‑dependent exopeptidase domain/pseudogene, zinc finger protein family | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 990 total aligned reads displayed.
TTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAA > CP009273/4521651‑4521783 | ttATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGc < 1:6771421/68‑1 (MQ=255)ttATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACG < 1:42920‑M1/67‑1 (MQ=255)ttATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACG < 1:16727195‑M1/67‑1 (MQ=255) aTGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTc < 1:23509864/68‑1 (MQ=255) aTGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTc < 1:25810628/68‑1 (MQ=255) aTGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTc < 1:27033979/68‑1 (MQ=255) tGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTc > 1:4922930/1‑67 (MQ=255) tGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTc > 1:28058931/1‑67 (MQ=255) tGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTc > 1:2946989/1‑67 (MQ=255) ttGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTccc > 1:14079024/1‑66 (MQ=255) ttGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCct < 1:22146948/67‑1 (MQ=255) ttGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCct < 1:12551505/67‑1 (MQ=255) tGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCctct < 1:20264846/68‑1 (MQ=255) tGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCctct < 1:7075876/68‑1 (MQ=255) tGAAATAATGAGGATCAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCctct < 1:24067352/68‑1 (MQ=255) gAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCtt < 1:7425929/68‑1 (MQ=255) aataatGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTc < 1:35415275/67‑1 (MQ=255) aataatGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTc < 1:36917842/67‑1 (MQ=255) aataatGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTc < 1:18343810/67‑1 (MQ=255) aataatGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTc < 1:23077453/67‑1 (MQ=255) ataatGAGGATGAATAAAACGCGGTAACTGTTATAGCTCCACTTTGTTGCAGGCCGCTCCCTCTTCAt > 1:37892371/1‑68 (MQ=255) ataatGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCAt > 1:30379785/1‑68 (MQ=255) ataatGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCAt < 1:5517548/68‑1 (MQ=255) taatGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCAtt > 1:6001115/1‑68 (MQ=255) ggATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgt < 1:37515644‑M2/66‑4 (MQ=255) gATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgt < 1:31805177‑M2/65‑4 (MQ=255) aTGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgtcct < 1:34674993‑M2/67‑7 (MQ=255) tGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgtcctgc > 1:36701069‑M2/1‑60 (MQ=255) tGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgtcctgc > 1:10373135‑M2/1‑60 (MQ=255) tAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGt < 1:38201566/68‑1 (MQ=255) aaaaCGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTg > 1:20822664/1‑68 (MQ=255) aaaaCGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTg > 1:19602279/1‑68 (MQ=255) aaaaCGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTg < 1:10653316/68‑1 (MQ=255) aCGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGAt > 1:8950688/1‑68 (MQ=255) aCGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGAt > 1:12235385/1‑68 (MQ=255) cgcgGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGAt > 1:37122027/1‑67 (MQ=255) ggTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATAcc < 1:39221984/67‑1 (MQ=255) aaCTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgtcctgcaacaaagtggtgct > 1:26424722‑M2/1‑45 (MQ=255) aaCTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCa < 1:33145500/67‑1 (MQ=255) aaCTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAg < 1:17490113/68‑1 (MQ=255) tGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCa > 1:33342037/1‑67 (MQ=255) ttATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCAtc > 1:25625950/1‑67 (MQ=255) tataGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCAtct < 1:28628707/67‑1 (MQ=255) ataGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTcc > 1:5204823/1‑68 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:20509578/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:38574090/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:38857818/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:30827155/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:16261938/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:23834418/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:21729813/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:18709086/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:26215908/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:18226264/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:10932511/1‑67 (MQ=255) caccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:34959692/1‑68 (MQ=255) caccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:17863708/1‑68 (MQ=255) caccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:11597957/1‑68 (MQ=255) caccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:15272332/1‑68 (MQ=255) caccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:24579400/1‑68 (MQ=255) caccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:34126655/1‑68 (MQ=255) caccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:32249675/1‑68 (MQ=255) caccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:21469639/1‑68 (MQ=255) caccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:8218358/1‑68 (MQ=255) accacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa < 1:1598360/67‑1 (MQ=255) accacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:11313324/1‑67 (MQ=255) acTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCgg > 1:35651560/1‑68 (MQ=255) acTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCgg > 1:13709903/1‑68 (MQ=255) acTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCAGCTCCATCAGCgg > 1:28362444/1‑68 (MQ=255) tttGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGAt < 1:15578677/68‑1 (MQ=255) tttGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGAt < 1:10142051/68‑1 (MQ=255) ttgttgCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATc < 1:33821858/68‑1 (MQ=255) tgCAGGACGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcgttttattc > 1:27752196‑M1/1‑9 (MQ=255) tgCAGGACGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcgttttattc > 1:20078622‑M1/1‑9 (MQ=255) tgCAGGACGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcgttttattc > 1:2278619‑M1/1‑9 (MQ=255) tgCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAg > 1:12739456/1‑68 (MQ=255) tgCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACACCAGCATCTCCATCAGCGGATCTTAg > 1:8484191/1‑68 (MQ=255) gCAGGACGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcgttttattca > 1:22456031‑M1/1‑8 (MQ=255) gCAGGACGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcggtttattca > 1:13279508‑M1/1‑8 (MQ=255) gCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGa < 1:25399402/68‑1 (MQ=255) gCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGa < 1:9424092/68‑1 (MQ=255) gCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGa > 1:39595213/1‑68 (MQ=255) aGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAAt > 1:4618967/1‑68 (MQ=255) gACGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcgttttattcatcc > 1:19129167‑M1/1‑4 (MQ=255) gACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt > 1:36488720/1‑68 (MQ=255) gACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt > 1:14536618/1‑68 (MQ=255) aCGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcgttttattcatcctc > 1:26806319‑M1/1‑3 (MQ=255) aCGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcgttttattcatcct < 1:6471683‑M1/67‑65 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAAt < 1:32570999/65‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAAt < 1:37361862/65‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAAt < 1:3587917/65‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt < 1:11841688/67‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt < 1:24993288/67‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt < 1:12964169/67‑1 (MQ=255) aCGCTCCATCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTa > 1:2899474/1‑68 (MQ=255) cGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcgttttattcatcctct > 1:9792564‑M1/1‑2 (MQ=255) cGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcgttttattcatcctca > 1:7767400‑M1/1‑2 (MQ=255) cGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcgttttattcatcctca < 1:30184622‑M1/68‑67 (MQ=255) cGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcgttttattcatcctca > 1:35257276‑M1/1‑2 (MQ=255) cGtaatgaagagggagcgtcctgcaacaaagtggtgctataacagttaccgcgttttattcatcctc < 1:31366378‑M1/67‑66 (MQ=255) | TTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAA > CP009273/4521651‑4521783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |