| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4521717 | 587 (1.240) | 4 (0.010) | 3/94 | NT | 0.75% | intergenic (‑249/+150) | sgcX/yjhY | putative endoglucanase with Zn‑dependent exopeptidase domain/pseudogene, zinc finger protein family |
| ? | CP009273 | = 4521731 | 562 (1.410) | intergenic (‑263/+136) | sgcX/yjhY | putative endoglucanase with Zn‑dependent exopeptidase domain/pseudogene, zinc finger protein family | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 818 total aligned reads displayed.
ATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGT > CP009273/4521665‑4521798 | aTGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAc > 1:19718709‑M2/1‑67 (MQ=255) tGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcg < 1:9289129‑M2/68‑3 (MQ=255) tGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcg < 1:16023947‑M2/68‑3 (MQ=255) gAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcg < 1:16283329‑M2/67‑3 (MQ=255) gAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTATTGCAGGACGCTCCCTCTTCATTAcgt > 1:1825982‑M2/1‑65 (MQ=255) ggATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgtc > 1:39391242‑M2/1‑63 (MQ=255) ggATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgt < 1:35267393‑M2/66‑4 (MQ=255) aTGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgtcct > 1:34124289‑M2/1‑61 (MQ=255) tGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgtcctgc > 1:24029008‑M2/1‑60 (MQ=255) tGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgtcctgc > 1:4649027‑M2/1‑60 (MQ=255) tGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgtcctgc > 1:31443301‑M2/1‑60 (MQ=255) gAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgtcctgca > 1:38642083‑M2/1‑59 (MQ=255) gAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgtcctgca > 1:36819041‑M2/1‑59 (MQ=255) aTAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACg < 1:261772/68‑1 (MQ=255) tAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGt < 1:6167073/68‑1 (MQ=255) tAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGt > 1:24753719/1‑68 (MQ=255) aCGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGAt > 1:12235385/1‑68 (MQ=255) aCGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGAt > 1:6852906/1‑68 (MQ=255) aCGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGAt > 1:18000606/1‑68 (MQ=255) aCGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGAt > 1:8317805/1‑68 (MQ=255) aCGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGAt > 1:9680666/1‑68 (MQ=255) cgcgGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATa < 1:38370881/68‑1 (MQ=255) ggTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATAcc < 1:25582948/67‑1 (MQ=255) ggTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATAcc < 1:13904903/67‑1 (MQ=255) aaCTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTAcgtcctgcaacaaagtggtgct > 1:28282540‑M2/1‑45 (MQ=255) aaCTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCa < 1:14870194/67‑1 (MQ=255) tGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCAt < 1:33620152/68‑1 (MQ=255) ataGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTcc < 1:26679780/68‑1 (MQ=255) ataGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTcc > 1:10451385/1‑68 (MQ=255) taGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa < 1:19186384/68‑1 (MQ=255) aGCACCGCTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:28546278/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:27832077/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:10712343/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:21729813/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:1562457/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:2286787/1‑67 (MQ=255) aGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCa > 1:12998867/1‑67 (MQ=255) caccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:5256357/1‑68 (MQ=255) caccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:32700466/1‑68 (MQ=255) accacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:12757004/1‑67 (MQ=255) accacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa < 1:37493880/67‑1 (MQ=255) accacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:6582089/1‑67 (MQ=255) accacTTTGTTGCAGGACGCTCCCTCTTAATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCa > 1:17660757/1‑67 (MQ=255) ccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGc < 1:15309471/68‑1 (MQ=255) ccacTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGc < 1:39598171/68‑1 (MQ=255) acTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCgg > 1:20558385/1‑68 (MQ=255) tttGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGa > 1:22317125/1‑67 (MQ=255) tttGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGAt < 1:10142051/68‑1 (MQ=255) tttGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGAt < 1:23576899/68‑1 (MQ=255) ttgttgCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATc < 1:17384220/68‑1 (MQ=255) gttgCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCtt > 1:20823846/1‑68 (MQ=255) gttgCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCtt < 1:18731902/68‑1 (MQ=255) gttgCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCtt > 1:12462948/1‑68 (MQ=255) gttgCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCtt > 1:10938481/1‑68 (MQ=255) gttgCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCtt > 1:715874/1‑68 (MQ=255) tgCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAg > 1:34976392/1‑68 (MQ=255) gCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGa > 1:38055374/1‑68 (MQ=255) gCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGa < 1:23181585/68‑1 (MQ=255) gCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGa < 1:5028223/68‑1 (MQ=255) gCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGa > 1:35711776/1‑68 (MQ=255) aGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAAt > 1:35442051/1‑68 (MQ=255) gACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt > 1:39085204/1‑68 (MQ=255) gACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt > 1:36488720/1‑68 (MQ=255) gACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt > 1:25124102/1‑68 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAAt < 1:11536024/65‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAAt < 1:20264810/65‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAAt < 1:7676440/65‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAAt < 1:30258233/65‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAAt < 1:25747237/65‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt < 1:2136717/67‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt < 1:2254331/67‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt < 1:33249966/67‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt < 1:18370160/67‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGt < 1:11841688/67‑1 (MQ=255) aCGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTa > 1:30695550/1‑68 (MQ=255) cccTCTTGATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATgga < 1:29052303/68‑2 (MQ=255) cccTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGgc < 1:5771860/68‑1 (MQ=255) cccTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGgc < 1:8901180/68‑1 (MQ=255) cccTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGgc > 1:29906113/1‑68 (MQ=255) ctctTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGgcgc < 1:27210425/68‑1 (MQ=255) ctTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGt < 1:2435300/68‑1 (MQ=255) ctTCATTACGTCCTGCACGTGGATACCCCAGAATCACCATCAGCGGATCTTAGAATGTAATGGCGCGt > 1:1668378/1‑68 (MQ=255) ttCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTg > 1:37250036/1‑68 (MQ=255) ttCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTg > 1:26357900/1‑68 (MQ=255) ttCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTg > 1:4400964/1‑68 (MQ=255) ttCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTg < 1:30992257/68‑1 (MQ=255) ttCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTg > 1:3450934/1‑68 (MQ=255) tCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTgg < 1:36113321/68‑1 (MQ=255) cATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGc > 1:37666073/1‑68 (MQ=255) cATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGc > 1:8463335/1‑68 (MQ=255) cATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGc > 1:7832002/1‑68 (MQ=255) cATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGc > 1:11209263/1‑68 (MQ=255) aTTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCa > 1:32348550/1‑68 (MQ=255) ttACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAg > 1:1442587/1‑68 (MQ=255) ttACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAg > 1:37037250/1‑68 (MQ=255) tACGTCCTGCACGTGGATACCCCTGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAgg < 1:1328019/68‑1 (MQ=255) aCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAgg > 1:25423303/1‑67 (MQ=255) aCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAgg > 1:33848211/1‑67 (MQ=255) aCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAgg > 1:31937964/1‑67 (MQ=255) aCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAgg > 1:14167514/1‑67 (MQ=255) | ATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGT > CP009273/4521665‑4521798 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |